Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3583 | 3' | -47.5 | NC_001650.1 | + | 172681 | 0.68 | 0.999384 |
Target: 5'- ---uUGGGCCuUUGGGaUAAUUA-CCCa -3' miRNA: 3'- acauACUCGGuAACCC-AUUGAUaGGG- -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 6197 | 0.68 | 0.999384 |
Target: 5'- ---uUGGGCCuUUGGGaUAAUUA-CCCg -3' miRNA: 3'- acauACUCGGuAACCC-AUUGAUaGGG- -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 6361 | 0.68 | 0.999384 |
Target: 5'- ---uUGGGCCuUUGGGaUAAUUA-CCCa -3' miRNA: 3'- acauACUCGGuAACCC-AUUGAUaGGG- -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 90543 | 0.68 | 0.999328 |
Target: 5'- --cAUGAGCCcg-GGGUAGCggggcugcgugCCCu -3' miRNA: 3'- acaUACUCGGuaaCCCAUUGaua--------GGG- -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 20745 | 0.68 | 0.999237 |
Target: 5'- --cAUGGGCCAUuaucacccuUGuGGUGAUUAUCUUg -3' miRNA: 3'- acaUACUCGGUA---------AC-CCAUUGAUAGGG- -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 73178 | 0.68 | 0.999237 |
Target: 5'- cGUAcUGGGCCA-UGGGgGACUuGUgCCa -3' miRNA: 3'- aCAU-ACUCGGUaACCCaUUGA-UAgGG- -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 53799 | 0.68 | 0.999062 |
Target: 5'- cGgg-GAGCCAaucagaGGcUAGCUGUCCCu -3' miRNA: 3'- aCauaCUCGGUaa----CCcAUUGAUAGGG- -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 21016 | 0.68 | 0.999003 |
Target: 5'- cUGUGUGAGUUAaaacaUGGGacccauacagcaguUAACUAUCCa -3' miRNA: 3'- -ACAUACUCGGUa----ACCC--------------AUUGAUAGGg -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 12324 | 0.68 | 0.99883 |
Target: 5'- gGUGUGuGCCAgggggguUUGGGguggGGCcAUCCUc -3' miRNA: 3'- aCAUACuCGGU-------AACCCa---UUGaUAGGG- -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 179031 | 0.68 | 0.99883 |
Target: 5'- gGUGUGuGCCAgggggguUUGGGguggGGCcAUCCUc -3' miRNA: 3'- aCAUACuCGGU-------AACCCa---UUGaUAGGG- -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 86225 | 0.68 | 0.998606 |
Target: 5'- aGUAUGAGCagcacGGGUAucucgcaggcGCUGUCUa -3' miRNA: 3'- aCAUACUCGguaa-CCCAU----------UGAUAGGg -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 183479 | 0.68 | 0.998579 |
Target: 5'- gUGgGUGGGCCcuaugauguauuaGUUGGGUGGCcAUCUUg -3' miRNA: 3'- -ACaUACUCGG-------------UAACCCAUUGaUAGGG- -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 16772 | 0.69 | 0.998315 |
Target: 5'- gUGgGUGGGCCuaugauguauuaGUUGGGUGGCcAUCUUg -3' miRNA: 3'- -ACaUACUCGG------------UAACCCAUUGaUAGGG- -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 145144 | 0.69 | 0.997974 |
Target: 5'- ----aGAGCCcccgGGGUAACUcccuuUCCCc -3' miRNA: 3'- acauaCUCGGuaa-CCCAUUGAu----AGGG- -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 7601 | 0.69 | 0.996588 |
Target: 5'- --cGUGGcCCAaUGGG-GGCUGUCCCa -3' miRNA: 3'- acaUACUcGGUaACCCaUUGAUAGGG- -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 174308 | 0.69 | 0.996588 |
Target: 5'- --cGUGGcCCAaUGGG-GGCUGUCCCa -3' miRNA: 3'- acaUACUcGGUaACCCaUUGAUAGGG- -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 8517 | 0.71 | 0.990228 |
Target: 5'- gUGUGUGGGUgG-UGGGcuACUGUCCa -3' miRNA: 3'- -ACAUACUCGgUaACCCauUGAUAGGg -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 175224 | 0.71 | 0.990228 |
Target: 5'- gUGUGUGGGUgG-UGGGcuACUGUCCa -3' miRNA: 3'- -ACAUACUCGgUaACCCauUGAUAGGg -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 63970 | 0.72 | 0.985581 |
Target: 5'- --gGUGGGCUAUUGGGgggcgagGGCUugcaacgcccuAUCCCu -3' miRNA: 3'- acaUACUCGGUAACCCa------UUGA-----------UAGGG- -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 100005 | 0.74 | 0.949403 |
Target: 5'- -aUGUGAGUCAUUGGaGUcGACUccaaaGUCCCu -3' miRNA: 3'- acAUACUCGGUAACC-CA-UUGA-----UAGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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