miRNA display CGI


Results 41 - 60 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3583 5' -62 NC_001650.1 + 27223 0.67 0.61863
Target:  5'- gGGGGGCgGgCgACUGCAgCCUCa-- -3'
miRNA:   3'- aCCCCCGaUgGgUGACGUgGGAGccg -5'
3583 5' -62 NC_001650.1 + 99030 0.67 0.608893
Target:  5'- uUGGGGGuCUcaugacGCCC-CUGU-CCCUCuGCa -3'
miRNA:   3'- -ACCCCC-GA------UGGGuGACGuGGGAGcCG- -5'
3583 5' -62 NC_001650.1 + 166988 0.67 0.608893
Target:  5'- gGGGGGUUuCCCGg-GCcccucUCCUCGGCc -3'
miRNA:   3'- aCCCCCGAuGGGUgaCGu----GGGAGCCG- -5'
3583 5' -62 NC_001650.1 + 72422 0.67 0.61863
Target:  5'- cGcGuaGUUGCCCACgUGCACC-UCGGCg -3'
miRNA:   3'- aC-CccCGAUGGGUG-ACGUGGgAGCCG- -5'
3583 5' -62 NC_001650.1 + 174842 0.67 0.61863
Target:  5'- aUGGGGGaUGUCCACUaGC-CCCUCuGCc -3'
miRNA:   3'- -ACCCCCgAUGGGUGA-CGuGGGAGcCG- -5'
3583 5' -62 NC_001650.1 + 22638 0.67 0.61863
Target:  5'- gGGuGGGCgcGCCCGa-GCACCuCUgGGCc -3'
miRNA:   3'- aCC-CCCGa-UGGGUgaCGUGG-GAgCCG- -5'
3583 5' -62 NC_001650.1 + 46601 0.67 0.608893
Target:  5'- aGGGGGCcGCCgcggCGCaucugGUGCCCcgCGGCc -3'
miRNA:   3'- aCCCCCGaUGG----GUGa----CGUGGGa-GCCG- -5'
3583 5' -62 NC_001650.1 + 131461 0.67 0.599172
Target:  5'- aUGGGGG--GCCUcCUGCGCgUUgGGCa -3'
miRNA:   3'- -ACCCCCgaUGGGuGACGUGgGAgCCG- -5'
3583 5' -62 NC_001650.1 + 4066 0.67 0.64787
Target:  5'- aGGGGGCUuccuaGCCCccuaccagcAUUGCaacagACCC-CGGUg -3'
miRNA:   3'- aCCCCCGA-----UGGG---------UGACG-----UGGGaGCCG- -5'
3583 5' -62 NC_001650.1 + 170773 0.67 0.64787
Target:  5'- aGGGGGCUuccuaGCCCccuaccagcAUUGCaacagACCC-CGGUg -3'
miRNA:   3'- aCCCCCGA-----UGGG---------UGACG-----UGGGaGCCG- -5'
3583 5' -62 NC_001650.1 + 56947 0.67 0.642024
Target:  5'- -uGGGGCcagugaagGCCCAgUguggauguuucggugGCGCCCUCGaGCg -3'
miRNA:   3'- acCCCCGa-------UGGGUgA---------------CGUGGGAGC-CG- -5'
3583 5' -62 NC_001650.1 + 59563 0.67 0.599172
Target:  5'- cUGGGGGC-GCCaggAgUGCgaGCCCUgGGUg -3'
miRNA:   3'- -ACCCCCGaUGGg--UgACG--UGGGAgCCG- -5'
3583 5' -62 NC_001650.1 + 76875 0.67 0.61863
Target:  5'- cGGGGGUgcagugGCCCAUguaCAUCCUgGGg -3'
miRNA:   3'- aCCCCCGa-----UGGGUGac-GUGGGAgCCg -5'
3583 5' -62 NC_001650.1 + 281 0.67 0.608893
Target:  5'- gGGGGGUUuCCCGg-GCcccucUCCUCGGCc -3'
miRNA:   3'- aCCCCCGAuGGGUgaCGu----GGGAGCCG- -5'
3583 5' -62 NC_001650.1 + 97853 0.67 0.61863
Target:  5'- cGGGucacGGCcACCaGCUGCcCCCUCGcGCc -3'
miRNA:   3'- aCCC----CCGaUGGgUGACGuGGGAGC-CG- -5'
3583 5' -62 NC_001650.1 + 8135 0.67 0.61863
Target:  5'- aUGGGGGaUGUCCACUaGC-CCCUCuGCc -3'
miRNA:   3'- -ACCCCCgAUGGGUGA-CGuGGGAGcCG- -5'
3583 5' -62 NC_001650.1 + 133472 0.67 0.6352
Target:  5'- cGGGGGCUucgGCCU-CUGCgGCCCccuguuguuuuuucUCGGg -3'
miRNA:   3'- aCCCCCGA---UGGGuGACG-UGGG--------------AGCCg -5'
3583 5' -62 NC_001650.1 + 45423 0.68 0.560567
Target:  5'- uUGGGGGUgaGCCCguggaACcGCGCCC-CGGg -3'
miRNA:   3'- -ACCCCCGa-UGGG-----UGaCGUGGGaGCCg -5'
3583 5' -62 NC_001650.1 + 93592 0.68 0.589472
Target:  5'- gUGGGGG-UGCCCAUcuuggccaGCGCCCcaaaGGCc -3'
miRNA:   3'- -ACCCCCgAUGGGUGa-------CGUGGGag--CCG- -5'
3583 5' -62 NC_001650.1 + 71649 0.68 0.560567
Target:  5'- gGGGGGCUGCUCguACUcgaGCCCgUgGGCc -3'
miRNA:   3'- aCCCCCGAUGGG--UGAcg-UGGG-AgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.