miRNA display CGI


Results 21 - 40 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3583 5' -62 NC_001650.1 + 131822 0.66 0.705843
Target:  5'- cGGGuGGCcAgCagcaGCUGCGCCCacUGGCg -3'
miRNA:   3'- aCCC-CCGaUgGg---UGACGUGGGa-GCCG- -5'
3583 5' -62 NC_001650.1 + 66626 0.66 0.667318
Target:  5'- cGGcGGGCUccacggGCCCGCa-CACCCUCcuGCu -3'
miRNA:   3'- aCC-CCCGA------UGGGUGacGUGGGAGc-CG- -5'
3583 5' -62 NC_001650.1 + 180389 0.66 0.667318
Target:  5'- aGGGGGCgucUCCAUgaUGUACCC--GGCc -3'
miRNA:   3'- aCCCCCGau-GGGUG--ACGUGGGagCCG- -5'
3583 5' -62 NC_001650.1 + 110820 0.66 0.663435
Target:  5'- uUGGGGGU---CCGCUGCugCUguugcugcuggggCGGCc -3'
miRNA:   3'- -ACCCCCGaugGGUGACGugGGa------------GCCG- -5'
3583 5' -62 NC_001650.1 + 45086 0.66 0.65663
Target:  5'- cGGGGGuCUcCCCugagcggGCUGCGgCUUgCGGCc -3'
miRNA:   3'- aCCCCC-GAuGGG-------UGACGUgGGA-GCCG- -5'
3583 5' -62 NC_001650.1 + 60641 0.66 0.657603
Target:  5'- gGGGGGCcACCguCUccaGCugCCUgGGg -3'
miRNA:   3'- aCCCCCGaUGGguGA---CGugGGAgCCg -5'
3583 5' -62 NC_001650.1 + 62386 0.66 0.661491
Target:  5'- aGGGGGCUACUCugUugGUuggggaggaacccagGCCCa-GGCu -3'
miRNA:   3'- aCCCCCGAUGGGugA--CG---------------UGGGagCCG- -5'
3583 5' -62 NC_001650.1 + 136627 0.66 0.667318
Target:  5'- cGGGGGCg--UCGggGCGCCCUgaGGCu -3'
miRNA:   3'- aCCCCCGaugGGUgaCGUGGGAg-CCG- -5'
3583 5' -62 NC_001650.1 + 129952 0.67 0.61863
Target:  5'- gUGGcGGGCacGCCC-CUggagGCGCCCgUGGCg -3'
miRNA:   3'- -ACC-CCCGa-UGGGuGA----CGUGGGaGCCG- -5'
3583 5' -62 NC_001650.1 + 97853 0.67 0.61863
Target:  5'- cGGGucacGGCcACCaGCUGCcCCCUCGcGCc -3'
miRNA:   3'- aCCC----CCGaUGGgUGACGuGGGAGC-CG- -5'
3583 5' -62 NC_001650.1 + 47070 0.67 0.61863
Target:  5'- cGGcGGGCUAUCCucGCggGCGcCCCUCGcCa -3'
miRNA:   3'- aCC-CCCGAUGGG--UGa-CGU-GGGAGCcG- -5'
3583 5' -62 NC_001650.1 + 22638 0.67 0.61863
Target:  5'- gGGuGGGCgcGCCCGa-GCACCuCUgGGCc -3'
miRNA:   3'- aCC-CCCGa-UGGGUgaCGUGG-GAgCCG- -5'
3583 5' -62 NC_001650.1 + 15543 0.67 0.628376
Target:  5'- aGGuGGGCUguuGCUCugUGgGCCgguuguuggccgCUCGGCu -3'
miRNA:   3'- aCC-CCCGA---UGGGugACgUGG------------GAGCCG- -5'
3583 5' -62 NC_001650.1 + 133472 0.67 0.6352
Target:  5'- cGGGGGCUucgGCCU-CUGCgGCCCccuguuguuuuuucUCGGg -3'
miRNA:   3'- aCCCCCGA---UGGGuGACG-UGGG--------------AGCCg -5'
3583 5' -62 NC_001650.1 + 56947 0.67 0.642024
Target:  5'- -uGGGGCcagugaagGCCCAgUguggauguuucggugGCGCCCUCGaGCg -3'
miRNA:   3'- acCCCCGa-------UGGGUgA---------------CGUGGGAGC-CG- -5'
3583 5' -62 NC_001650.1 + 182250 0.67 0.628376
Target:  5'- aGGuGGGCUguuGCUCugUGgGCCgguuguuggccgCUCGGCu -3'
miRNA:   3'- aCC-CCCGA---UGGGugACgUGG------------GAGCCG- -5'
3583 5' -62 NC_001650.1 + 8135 0.67 0.61863
Target:  5'- aUGGGGGaUGUCCACUaGC-CCCUCuGCc -3'
miRNA:   3'- -ACCCCCgAUGGGUGA-CGuGGGAGcCG- -5'
3583 5' -62 NC_001650.1 + 170773 0.67 0.64787
Target:  5'- aGGGGGCUuccuaGCCCccuaccagcAUUGCaacagACCC-CGGUg -3'
miRNA:   3'- aCCCCCGA-----UGGG---------UGACG-----UGGGaGCCG- -5'
3583 5' -62 NC_001650.1 + 51215 0.67 0.638125
Target:  5'- aGGGGGCcGCCgCGCccGCGCCCcCGu- -3'
miRNA:   3'- aCCCCCGaUGG-GUGa-CGUGGGaGCcg -5'
3583 5' -62 NC_001650.1 + 30472 0.67 0.638125
Target:  5'- gGGGGGuCUcgcccaucccGCCCGCggacGCGuacgugUCCUCGGUg -3'
miRNA:   3'- aCCCCC-GA----------UGGGUGa---CGU------GGGAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.