miRNA display CGI


Results 21 - 40 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3583 5' -62 NC_001650.1 + 129153 0.75 0.242262
Target:  5'- cGGGGGCgGCCCuCUuCGCCCUCucggaGGCg -3'
miRNA:   3'- aCCCCCGaUGGGuGAcGUGGGAG-----CCG- -5'
3583 5' -62 NC_001650.1 + 101801 0.75 0.247886
Target:  5'- aGaGGGGCUGCCCGCUGgcggagaagaUACCCgCGuGCg -3'
miRNA:   3'- aC-CCCCGAUGGGUGAC----------GUGGGaGC-CG- -5'
3583 5' -62 NC_001650.1 + 183866 0.74 0.25304
Target:  5'- aUGGGGGCUuCCCACUGagauggcCACCCccgaGGUg -3'
miRNA:   3'- -ACCCCCGAuGGGUGAC-------GUGGGag--CCG- -5'
3583 5' -62 NC_001650.1 + 17159 0.74 0.25304
Target:  5'- aUGGGGGCUuCCCACUGagauggcCACCCccgaGGUg -3'
miRNA:   3'- -ACCCCCGAuGGGUGAC-------GUGGGag--CCG- -5'
3583 5' -62 NC_001650.1 + 29650 0.74 0.267818
Target:  5'- gUGGGGGUUGuCCCcgucgcucagaaucuGCUGCACCCUCc-- -3'
miRNA:   3'- -ACCCCCGAU-GGG---------------UGACGUGGGAGccg -5'
3583 5' -62 NC_001650.1 + 112191 0.74 0.271467
Target:  5'- aGGGGGCUGCCCACcuuaaccuCCCUCaGGa -3'
miRNA:   3'- aCCCCCGAUGGGUGacgu----GGGAG-CCg -5'
3583 5' -62 NC_001650.1 + 6148 0.74 0.277638
Target:  5'- aGGGGGaCUGCCCACUcaACCCcaUGGCc -3'
miRNA:   3'- aCCCCC-GAUGGGUGAcgUGGGa-GCCG- -5'
3583 5' -62 NC_001650.1 + 172855 0.74 0.277638
Target:  5'- aGGGGGaCUGCCCACUcaACCCcaUGGCc -3'
miRNA:   3'- aCCCCC-GAUGGGUGAcgUGGGa-GCCG- -5'
3583 5' -62 NC_001650.1 + 136259 0.73 0.296819
Target:  5'- cUGGGGGagUACUCuCUGC-CCCUCGuGCg -3'
miRNA:   3'- -ACCCCCg-AUGGGuGACGuGGGAGC-CG- -5'
3583 5' -62 NC_001650.1 + 184389 0.73 0.303438
Target:  5'- aGGGGGCgugGCCCACUuacCCCUCaucccaGGCa -3'
miRNA:   3'- aCCCCCGa--UGGGUGAcguGGGAG------CCG- -5'
3583 5' -62 NC_001650.1 + 17682 0.73 0.303438
Target:  5'- aGGGGGCgugGCCCACUuacCCCUCaucccaGGCa -3'
miRNA:   3'- aCCCCCGa--UGGGUGAcguGGGAG------CCG- -5'
3583 5' -62 NC_001650.1 + 599 0.73 0.310169
Target:  5'- aGGGGGCgagGCCgGgCUGcCGCCCUCccccgGGCc -3'
miRNA:   3'- aCCCCCGa--UGGgU-GAC-GUGGGAG-----CCG- -5'
3583 5' -62 NC_001650.1 + 52615 0.73 0.310169
Target:  5'- aUGGGGGCcacugGCCCGg-GggUCCUCGGCa -3'
miRNA:   3'- -ACCCCCGa----UGGGUgaCguGGGAGCCG- -5'
3583 5' -62 NC_001650.1 + 167306 0.73 0.310169
Target:  5'- aGGGGGCgagGCCgGgCUGcCGCCCUCccccgGGCc -3'
miRNA:   3'- aCCCCCGa--UGGgU-GAC-GUGGGAG-----CCG- -5'
3583 5' -62 NC_001650.1 + 49417 0.73 0.317014
Target:  5'- gGGGGGUgagcACCaggcgcaGCU-CGCCCUCGGCc -3'
miRNA:   3'- aCCCCCGa---UGGg------UGAcGUGGGAGCCG- -5'
3583 5' -62 NC_001650.1 + 62878 0.73 0.323971
Target:  5'- aGGGGGCU--CCGgaGCACCCgggGGCg -3'
miRNA:   3'- aCCCCCGAugGGUgaCGUGGGag-CCG- -5'
3583 5' -62 NC_001650.1 + 26553 0.72 0.338226
Target:  5'- gGGGGGCgagguguuCUCGCUGCcccuGCUCUCGGg -3'
miRNA:   3'- aCCCCCGau------GGGUGACG----UGGGAGCCg -5'
3583 5' -62 NC_001650.1 + 165019 0.72 0.338226
Target:  5'- cGGGGGuCUGCUCGCgGcCGCCggCGGCu -3'
miRNA:   3'- aCCCCC-GAUGGGUGaC-GUGGgaGCCG- -5'
3583 5' -62 NC_001650.1 + 134366 0.72 0.338226
Target:  5'- gGGaGGGCcGCCCGCggucGCcCCCUUGGUc -3'
miRNA:   3'- aCC-CCCGaUGGGUGa---CGuGGGAGCCG- -5'
3583 5' -62 NC_001650.1 + 48468 0.72 0.352185
Target:  5'- aGGGGGCUAgCCGCcuggaaGCagccccccucgagACCCUCGGa -3'
miRNA:   3'- aCCCCCGAUgGGUGa-----CG-------------UGGGAGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.