miRNA display CGI


Results 21 - 40 of 148 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3583 5' -62 NC_001650.1 + 102811 0.66 0.667318
Target:  5'- gGGGGGUgagcuguCgCUGCUGCAUCUggGGCg -3'
miRNA:   3'- aCCCCCGau-----G-GGUGACGUGGGagCCG- -5'
3583 5' -62 NC_001650.1 + 66626 0.66 0.667318
Target:  5'- cGGcGGGCUccacggGCCCGCa-CACCCUCcuGCu -3'
miRNA:   3'- aCC-CCCGA------UGGGUGacGUGGGAGc-CG- -5'
3583 5' -62 NC_001650.1 + 136627 0.66 0.667318
Target:  5'- cGGGGGCg--UCGggGCGCCCUgaGGCu -3'
miRNA:   3'- aCCCCCGaugGGUgaCGUGGGAg-CCG- -5'
3583 5' -62 NC_001650.1 + 110820 0.66 0.663435
Target:  5'- uUGGGGGU---CCGCUGCugCUguugcugcuggggCGGCc -3'
miRNA:   3'- -ACCCCCGaugGGUGACGugGGa------------GCCG- -5'
3583 5' -62 NC_001650.1 + 62386 0.66 0.661491
Target:  5'- aGGGGGCUACUCugUugGUuggggaggaacccagGCCCa-GGCu -3'
miRNA:   3'- aCCCCCGAUGGGugA--CG---------------UGGGagCCG- -5'
3583 5' -62 NC_001650.1 + 60641 0.66 0.657603
Target:  5'- gGGGGGCcACCguCUccaGCugCCUgGGg -3'
miRNA:   3'- aCCCCCGaUGGguGA---CGugGGAgCCg -5'
3583 5' -62 NC_001650.1 + 83739 0.66 0.657603
Target:  5'- -cGGGGCgcCCCGugcCUGCACCuCUCccaccuaucgGGCg -3'
miRNA:   3'- acCCCCGauGGGU---GACGUGG-GAG----------CCG- -5'
3583 5' -62 NC_001650.1 + 45086 0.66 0.65663
Target:  5'- cGGGGGuCUcCCCugagcggGCUGCGgCUUgCGGCc -3'
miRNA:   3'- aCCCCC-GAuGGG-------UGACGUgGGA-GCCG- -5'
3583 5' -62 NC_001650.1 + 170773 0.67 0.64787
Target:  5'- aGGGGGCUuccuaGCCCccuaccagcAUUGCaacagACCC-CGGUg -3'
miRNA:   3'- aCCCCCGA-----UGGG---------UGACG-----UGGGaGCCG- -5'
3583 5' -62 NC_001650.1 + 4066 0.67 0.64787
Target:  5'- aGGGGGCUuccuaGCCCccuaccagcAUUGCaacagACCC-CGGUg -3'
miRNA:   3'- aCCCCCGA-----UGGG---------UGACG-----UGGGaGCCG- -5'
3583 5' -62 NC_001650.1 + 21630 0.67 0.64787
Target:  5'- gGGGGGCUgACCCccgggGCcgUGCugCCacgUgGGCa -3'
miRNA:   3'- aCCCCCGA-UGGG-----UG--ACGugGG---AgCCG- -5'
3583 5' -62 NC_001650.1 + 56947 0.67 0.642024
Target:  5'- -uGGGGCcagugaagGCCCAgUguggauguuucggugGCGCCCUCGaGCg -3'
miRNA:   3'- acCCCCGa-------UGGGUgA---------------CGUGGGAGC-CG- -5'
3583 5' -62 NC_001650.1 + 57251 0.67 0.638125
Target:  5'- gGGGcGGCUGuugcugcugcgcCCCGCaUGCcuccccuCCCUCGGg -3'
miRNA:   3'- aCCC-CCGAU------------GGGUG-ACGu------GGGAGCCg -5'
3583 5' -62 NC_001650.1 + 30472 0.67 0.638125
Target:  5'- gGGGGGuCUcgcccaucccGCCCGCggacGCGuacgugUCCUCGGUg -3'
miRNA:   3'- aCCCCC-GA----------UGGGUGa---CGU------GGGAGCCG- -5'
3583 5' -62 NC_001650.1 + 51215 0.67 0.638125
Target:  5'- aGGGGGCcGCCgCGCccGCGCCCcCGu- -3'
miRNA:   3'- aCCCCCGaUGG-GUGa-CGUGGGaGCcg -5'
3583 5' -62 NC_001650.1 + 133472 0.67 0.6352
Target:  5'- cGGGGGCUucgGCCU-CUGCgGCCCccuguuguuuuuucUCGGg -3'
miRNA:   3'- aCCCCCGA---UGGGuGACG-UGGG--------------AGCCg -5'
3583 5' -62 NC_001650.1 + 182250 0.67 0.628376
Target:  5'- aGGuGGGCUguuGCUCugUGgGCCgguuguuggccgCUCGGCu -3'
miRNA:   3'- aCC-CCCGA---UGGGugACgUGG------------GAGCCG- -5'
3583 5' -62 NC_001650.1 + 15543 0.67 0.628376
Target:  5'- aGGuGGGCUguuGCUCugUGgGCCgguuguuggccgCUCGGCu -3'
miRNA:   3'- aCC-CCCGA---UGGGugACgUGG------------GAGCCG- -5'
3583 5' -62 NC_001650.1 + 135895 0.67 0.622527
Target:  5'- gGGGGGCcucUGCCCgccccucccugagaaACaUGCACCUg-GGCu -3'
miRNA:   3'- aCCCCCG---AUGGG---------------UG-ACGUGGGagCCG- -5'
3583 5' -62 NC_001650.1 + 72422 0.67 0.61863
Target:  5'- cGcGuaGUUGCCCACgUGCACC-UCGGCg -3'
miRNA:   3'- aC-CccCGAUGGGUG-ACGUGGgAGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.