miRNA display CGI


Results 21 - 40 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3583 5' -62 NC_001650.1 + 15543 0.67 0.628376
Target:  5'- aGGuGGGCUguuGCUCugUGgGCCgguuguuggccgCUCGGCu -3'
miRNA:   3'- aCC-CCCGA---UGGGugACgUGG------------GAGCCG- -5'
3583 5' -62 NC_001650.1 + 17159 0.74 0.25304
Target:  5'- aUGGGGGCUuCCCACUGagauggcCACCCccgaGGUg -3'
miRNA:   3'- -ACCCCCGAuGGGUGAC-------GUGGGag--CCG- -5'
3583 5' -62 NC_001650.1 + 17682 0.73 0.303438
Target:  5'- aGGGGGCgugGCCCACUuacCCCUCaucccaGGCa -3'
miRNA:   3'- aCCCCCGa--UGGGUGAcguGGGAG------CCG- -5'
3583 5' -62 NC_001650.1 + 18089 0.71 0.416145
Target:  5'- cUGGGGGCUcuaACCUcugAUaugggggaagaaUGCcuCCCUCGGCg -3'
miRNA:   3'- -ACCCCCGA---UGGG---UG------------ACGu-GGGAGCCG- -5'
3583 5' -62 NC_001650.1 + 21630 0.67 0.64787
Target:  5'- gGGGGGCUgACCCccgggGCcgUGCugCCacgUgGGCa -3'
miRNA:   3'- aCCCCCGA-UGGG-----UG--ACGugGG---AgCCG- -5'
3583 5' -62 NC_001650.1 + 22288 0.65 0.713455
Target:  5'- cGGGGccucggaGCUggACCUccucuacucggagGCggGCACCUUCGGCu -3'
miRNA:   3'- aCCCC-------CGA--UGGG-------------UGa-CGUGGGAGCCG- -5'
3583 5' -62 NC_001650.1 + 22638 0.67 0.61863
Target:  5'- gGGuGGGCgcGCCCGa-GCACCuCUgGGCc -3'
miRNA:   3'- aCC-CCCGa-UGGGUgaCGUGG-GAgCCG- -5'
3583 5' -62 NC_001650.1 + 23157 0.68 0.589472
Target:  5'- cGGGacGGCcuccuacagGCCCACcGCGCCCUCcagGGUc -3'
miRNA:   3'- aCCC--CCGa--------UGGGUGaCGUGGGAG---CCG- -5'
3583 5' -62 NC_001650.1 + 23410 0.66 0.696277
Target:  5'- gGGGGGCccgGCgUCGCUGCuguuguaggggACCCUggagGGCg -3'
miRNA:   3'- aCCCCCGa--UG-GGUGACG-----------UGGGAg---CCG- -5'
3583 5' -62 NC_001650.1 + 23760 0.69 0.518942
Target:  5'- gGGGGGCggagACCCgcccgaggggggcGCUGaCAUcaaguccuuuguggCCUCGGCc -3'
miRNA:   3'- aCCCCCGa---UGGG-------------UGAC-GUG--------------GGAGCCG- -5'
3583 5' -62 NC_001650.1 + 23783 0.72 0.352931
Target:  5'- aUGGGGGCcaggGCCagGCUGaggaCGCUCUCGGUa -3'
miRNA:   3'- -ACCCCCGa---UGGg-UGAC----GUGGGAGCCG- -5'
3583 5' -62 NC_001650.1 + 24942 0.76 0.20582
Target:  5'- cGGGGGUccugcUGCCCuGCUGgGCCCagGGCa -3'
miRNA:   3'- aCCCCCG-----AUGGG-UGACgUGGGagCCG- -5'
3583 5' -62 NC_001650.1 + 25182 0.68 0.541512
Target:  5'- aGGGGGCcccgaACCCcagguggGUGCCCUgGGCc -3'
miRNA:   3'- aCCCCCGa----UGGGuga----CGUGGGAgCCG- -5'
3583 5' -62 NC_001650.1 + 26553 0.72 0.338226
Target:  5'- gGGGGGCgagguguuCUCGCUGCcccuGCUCUCGGg -3'
miRNA:   3'- aCCCCCGau------GGGUGACG----UGGGAGCCg -5'
3583 5' -62 NC_001650.1 + 27223 0.67 0.61863
Target:  5'- gGGGGGCgGgCgACUGCAgCCUCa-- -3'
miRNA:   3'- aCCCCCGaUgGgUGACGUgGGAGccg -5'
3583 5' -62 NC_001650.1 + 29650 0.74 0.267818
Target:  5'- gUGGGGGUUGuCCCcgucgcucagaaucuGCUGCACCCUCc-- -3'
miRNA:   3'- -ACCCCCGAU-GGG---------------UGACGUGGGAGccg -5'
3583 5' -62 NC_001650.1 + 30472 0.67 0.638125
Target:  5'- gGGGGGuCUcgcccaucccGCCCGCggacGCGuacgugUCCUCGGUg -3'
miRNA:   3'- aCCCCC-GA----------UGGGUGa---CGU------GGGAGCCG- -5'
3583 5' -62 NC_001650.1 + 30669 0.68 0.570164
Target:  5'- cUGGGGGCggACgCGC-GCGCCgCggGGCg -3'
miRNA:   3'- -ACCCCCGa-UGgGUGaCGUGG-GagCCG- -5'
3583 5' -62 NC_001650.1 + 31457 0.66 0.696277
Target:  5'- gUGuGGGGCaGCgCuCUGUACgCgUCGGCg -3'
miRNA:   3'- -AC-CCCCGaUGgGuGACGUG-GgAGCCG- -5'
3583 5' -62 NC_001650.1 + 35172 0.71 0.383675
Target:  5'- cGGGGGUggugcCCCACaccaGCACCCUggaccCGGUg -3'
miRNA:   3'- aCCCCCGau---GGGUGa---CGUGGGA-----GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.