miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3583 5' -62 NC_001650.1 + 281 0.67 0.608893
Target:  5'- gGGGGGUUuCCCGg-GCcccucUCCUCGGCc -3'
miRNA:   3'- aCCCCCGAuGGGUgaCGu----GGGAGCCG- -5'
3583 5' -62 NC_001650.1 + 599 0.73 0.310169
Target:  5'- aGGGGGCgagGCCgGgCUGcCGCCCUCccccgGGCc -3'
miRNA:   3'- aCCCCCGa--UGGgU-GAC-GUGGGAG-----CCG- -5'
3583 5' -62 NC_001650.1 + 1642 0.69 0.507796
Target:  5'- gGGGGGCcgGCCUuguggugugagguaaGCUGUugCCg-GGCa -3'
miRNA:   3'- aCCCCCGa-UGGG---------------UGACGugGGagCCG- -5'
3583 5' -62 NC_001650.1 + 4066 0.67 0.64787
Target:  5'- aGGGGGCUuccuaGCCCccuaccagcAUUGCaacagACCC-CGGUg -3'
miRNA:   3'- aCCCCCGA-----UGGG---------UGACG-----UGGGaGCCG- -5'
3583 5' -62 NC_001650.1 + 5835 0.71 0.375824
Target:  5'- aGGGGGCcGCCCACUcUACCCUgugaccaaUGGg -3'
miRNA:   3'- aCCCCCGaUGGGUGAcGUGGGA--------GCCg -5'
3583 5' -62 NC_001650.1 + 5867 0.83 0.065832
Target:  5'- aUGGGGGCUACCCACUaaGCCC-CGGg -3'
miRNA:   3'- -ACCCCCGAUGGGUGAcgUGGGaGCCg -5'
3583 5' -62 NC_001650.1 + 6025 0.78 0.154367
Target:  5'- aGGGGGcCUGCCCACUcUACCCUaaGGCc -3'
miRNA:   3'- aCCCCC-GAUGGGUGAcGUGGGAg-CCG- -5'
3583 5' -62 NC_001650.1 + 6148 0.74 0.277638
Target:  5'- aGGGGGaCUGCCCACUcaACCCcaUGGCc -3'
miRNA:   3'- aCCCCC-GAUGGGUGAcgUGGGa-GCCG- -5'
3583 5' -62 NC_001650.1 + 6493 0.71 0.383675
Target:  5'- gGGGGaGUUGCCCACUaCcCCCUCuGCc -3'
miRNA:   3'- aCCCC-CGAUGGGUGAcGuGGGAGcCG- -5'
3583 5' -62 NC_001650.1 + 6656 0.76 0.196316
Target:  5'- aUGGGGGCUGCCCAUauC-CCCUCuGCc -3'
miRNA:   3'- -ACCCCCGAUGGGUGacGuGGGAGcCG- -5'
3583 5' -62 NC_001650.1 + 6778 0.7 0.441573
Target:  5'- aUGGGGGCUuagggguacuGCCCACUcUACuCCaUGGCc -3'
miRNA:   3'- -ACCCCCGA----------UGGGUGAcGUG-GGaGCCG- -5'
3583 5' -62 NC_001650.1 + 6945 0.66 0.673135
Target:  5'- aGGGGG-UGCUCACUgcauaugcaugaggGCauugggcaauaaaGCCCUUGGCc -3'
miRNA:   3'- aCCCCCgAUGGGUGA--------------CG-------------UGGGAGCCG- -5'
3583 5' -62 NC_001650.1 + 7469 1.1 0.000859
Target:  5'- aUGGGGGCUACCCACUGCACCCUCGGCc -3'
miRNA:   3'- -ACCCCCGAUGGGUGACGUGGGAGCCG- -5'
3583 5' -62 NC_001650.1 + 7704 0.76 0.187198
Target:  5'- aUGGGGGCUACCCACUaucucccaCACCCaaugggGGCu -3'
miRNA:   3'- -ACCCCCGAUGGGUGAc-------GUGGGag----CCG- -5'
3583 5' -62 NC_001650.1 + 8053 0.72 0.360451
Target:  5'- aGGGGGCggucggGCCa--UGCACCCagUGGCc -3'
miRNA:   3'- aCCCCCGa-----UGGgugACGUGGGa-GCCG- -5'
3583 5' -62 NC_001650.1 + 8135 0.67 0.61863
Target:  5'- aUGGGGGaUGUCCACUaGC-CCCUCuGCc -3'
miRNA:   3'- -ACCCCCgAUGGGUGA-CGuGGGAGcCG- -5'
3583 5' -62 NC_001650.1 + 8928 0.7 0.459004
Target:  5'- cGGGGGaguCCCAUgggGCcuaACCC-CGGCa -3'
miRNA:   3'- aCCCCCgauGGGUGa--CG---UGGGaGCCG- -5'
3583 5' -62 NC_001650.1 + 11699 0.72 0.360451
Target:  5'- aGGGGGC-GCCCAgaGCACCCaccgaGaGCu -3'
miRNA:   3'- aCCCCCGaUGGGUgaCGUGGGag---C-CG- -5'
3583 5' -62 NC_001650.1 + 13682 0.66 0.667318
Target:  5'- aGGGGGCgucUCCAUgaUGUACCC--GGCc -3'
miRNA:   3'- aCCCCCGau-GGGUG--ACGUGGGagCCG- -5'
3583 5' -62 NC_001650.1 + 15417 0.79 0.136587
Target:  5'- aGGGGGgaGCCCGCUGCGgCCUCa-- -3'
miRNA:   3'- aCCCCCgaUGGGUGACGUgGGAGccg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.