miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3583 5' -62 NC_001650.1 + 184389 0.73 0.303438
Target:  5'- aGGGGGCgugGCCCACUuacCCCUCaucccaGGCa -3'
miRNA:   3'- aCCCCCGa--UGGGUGAcguGGGAG------CCG- -5'
3583 5' -62 NC_001650.1 + 183866 0.74 0.25304
Target:  5'- aUGGGGGCUuCCCACUGagauggcCACCCccgaGGUg -3'
miRNA:   3'- -ACCCCCGAuGGGUGAC-------GUGGGag--CCG- -5'
3583 5' -62 NC_001650.1 + 183642 0.66 0.705843
Target:  5'- cUGGGGGCU-CCCuaccaauaugGCUGaCcCCCUCaugcgcacagggGGCu -3'
miRNA:   3'- -ACCCCCGAuGGG----------UGAC-GuGGGAG------------CCG- -5'
3583 5' -62 NC_001650.1 + 182250 0.67 0.628376
Target:  5'- aGGuGGGCUguuGCUCugUGgGCCgguuguuggccgCUCGGCu -3'
miRNA:   3'- aCC-CCCGA---UGGGugACgUGG------------GAGCCG- -5'
3583 5' -62 NC_001650.1 + 182124 0.79 0.136587
Target:  5'- aGGGGGgaGCCCGCUGCGgCCUCa-- -3'
miRNA:   3'- aCCCCCgaUGGGUGACGUgGGAGccg -5'
3583 5' -62 NC_001650.1 + 180389 0.66 0.667318
Target:  5'- aGGGGGCgucUCCAUgaUGUACCC--GGCc -3'
miRNA:   3'- aCCCCCGau-GGGUG--ACGUGGGagCCG- -5'
3583 5' -62 NC_001650.1 + 178406 0.72 0.360451
Target:  5'- aGGGGGC-GCCCAgaGCACCCaccgaGaGCu -3'
miRNA:   3'- aCCCCCGaUGGGUgaCGUGGGag---C-CG- -5'
3583 5' -62 NC_001650.1 + 175635 0.69 0.494923
Target:  5'- cGGGGGaguCCCAUggGCcuaACCC-CGGCa -3'
miRNA:   3'- aCCCCCgauGGGUGa-CG---UGGGaGCCG- -5'
3583 5' -62 NC_001650.1 + 174842 0.67 0.61863
Target:  5'- aUGGGGGaUGUCCACUaGC-CCCUCuGCc -3'
miRNA:   3'- -ACCCCCgAUGGGUGA-CGuGGGAGcCG- -5'
3583 5' -62 NC_001650.1 + 174760 0.72 0.360451
Target:  5'- aGGGGGCggucggGCCa--UGCACCCagUGGCc -3'
miRNA:   3'- aCCCCCGa-----UGGgugACGUGGGa-GCCG- -5'
3583 5' -62 NC_001650.1 + 174411 0.76 0.187198
Target:  5'- aUGGGGGCUACCCACUaucucccaCACCCaaugggGGCu -3'
miRNA:   3'- -ACCCCCGAUGGGUGAc-------GUGGGag----CCG- -5'
3583 5' -62 NC_001650.1 + 174176 1.1 0.000859
Target:  5'- aUGGGGGCUACCCACUGCACCCUCGGCc -3'
miRNA:   3'- -ACCCCCGAUGGGUGACGUGGGAGCCG- -5'
3583 5' -62 NC_001650.1 + 173652 0.66 0.673135
Target:  5'- aGGGGG-UGCUCACUgcauaugcaugaggGCauugggcaauaaaGCCCUUGGCc -3'
miRNA:   3'- aCCCCCgAUGGGUGA--------------CG-------------UGGGAGCCG- -5'
3583 5' -62 NC_001650.1 + 173484 0.66 0.705843
Target:  5'- aUGGGGGCUuagggguacuGCCCACUcuacuccauGCcaaugaagGCCCU-GGUu -3'
miRNA:   3'- -ACCCCCGA----------UGGGUGA---------CG--------UGGGAgCCG- -5'
3583 5' -62 NC_001650.1 + 173363 0.76 0.196316
Target:  5'- aUGGGGGCUGCCCAUauC-CCCUCuGCc -3'
miRNA:   3'- -ACCCCCGAUGGGUGacGuGGGAGcCG- -5'
3583 5' -62 NC_001650.1 + 173200 0.71 0.383675
Target:  5'- gGGGGaGUUGCCCACUaCcCCCUCuGCc -3'
miRNA:   3'- aCCCC-CGAUGGGUGAcGuGGGAGcCG- -5'
3583 5' -62 NC_001650.1 + 172855 0.74 0.277638
Target:  5'- aGGGGGaCUGCCCACUcaACCCcaUGGCc -3'
miRNA:   3'- aCCCCC-GAUGGGUGAcgUGGGa-GCCG- -5'
3583 5' -62 NC_001650.1 + 172732 0.78 0.154367
Target:  5'- aGGGGGcCUGCCCACUcUACCCUaaGGCc -3'
miRNA:   3'- aCCCCC-GAUGGGUGAcGUGGGAg-CCG- -5'
3583 5' -62 NC_001650.1 + 172574 0.83 0.065832
Target:  5'- aUGGGGGCUACCCACUaaGCCC-CGGg -3'
miRNA:   3'- -ACCCCCGAUGGGUGAcgUGGGaGCCg -5'
3583 5' -62 NC_001650.1 + 172542 0.71 0.375824
Target:  5'- aGGGGGCcGCCCACUcUACCCUgugaccaaUGGg -3'
miRNA:   3'- aCCCCCGaUGGGUGAcGUGGGA--------GCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.