miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3583 5' -62 NC_001650.1 + 7469 1.1 0.000859
Target:  5'- aUGGGGGCUACCCACUGCACCCUCGGCc -3'
miRNA:   3'- -ACCCCCGAUGGGUGACGUGGGAGCCG- -5'
3583 5' -62 NC_001650.1 + 174176 1.1 0.000859
Target:  5'- aUGGGGGCUACCCACUGCACCCUCGGCc -3'
miRNA:   3'- -ACCCCCGAUGGGUGACGUGGGAGCCG- -5'
3583 5' -62 NC_001650.1 + 172574 0.83 0.065832
Target:  5'- aUGGGGGCUACCCACUaaGCCC-CGGg -3'
miRNA:   3'- -ACCCCCGAUGGGUGAcgUGGGaGCCg -5'
3583 5' -62 NC_001650.1 + 5867 0.83 0.065832
Target:  5'- aUGGGGGCUACCCACUaaGCCC-CGGg -3'
miRNA:   3'- -ACCCCCGAUGGGUGAcgUGGGaGCCg -5'
3583 5' -62 NC_001650.1 + 134126 0.79 0.123739
Target:  5'- gGGGGGCgccCCCAgCUGUACUCUgGGCg -3'
miRNA:   3'- aCCCCCGau-GGGU-GACGUGGGAgCCG- -5'
3583 5' -62 NC_001650.1 + 15417 0.79 0.136587
Target:  5'- aGGGGGgaGCCCGCUGCGgCCUCa-- -3'
miRNA:   3'- aCCCCCgaUGGGUGACGUgGGAGccg -5'
3583 5' -62 NC_001650.1 + 182124 0.79 0.136587
Target:  5'- aGGGGGgaGCCCGCUGCGgCCUCa-- -3'
miRNA:   3'- aCCCCCgaUGGGUGACGUgGGAGccg -5'
3583 5' -62 NC_001650.1 + 172732 0.78 0.154367
Target:  5'- aGGGGGcCUGCCCACUcUACCCUaaGGCc -3'
miRNA:   3'- aCCCCC-GAUGGGUGAcGUGGGAg-CCG- -5'
3583 5' -62 NC_001650.1 + 6025 0.78 0.154367
Target:  5'- aGGGGGcCUGCCCACUcUACCCUaaGGCc -3'
miRNA:   3'- aCCCCC-GAUGGGUGAcGUGGGAg-CCG- -5'
3583 5' -62 NC_001650.1 + 174411 0.76 0.187198
Target:  5'- aUGGGGGCUACCCACUaucucccaCACCCaaugggGGCu -3'
miRNA:   3'- -ACCCCCGAUGGGUGAc-------GUGGGag----CCG- -5'
3583 5' -62 NC_001650.1 + 7704 0.76 0.187198
Target:  5'- aUGGGGGCUACCCACUaucucccaCACCCaaugggGGCu -3'
miRNA:   3'- -ACCCCCGAUGGGUGAc-------GUGGGag----CCG- -5'
3583 5' -62 NC_001650.1 + 6656 0.76 0.196316
Target:  5'- aUGGGGGCUGCCCAUauC-CCCUCuGCc -3'
miRNA:   3'- -ACCCCCGAUGGGUGacGuGGGAGcCG- -5'
3583 5' -62 NC_001650.1 + 173363 0.76 0.196316
Target:  5'- aUGGGGGCUGCCCAUauC-CCCUCuGCc -3'
miRNA:   3'- -ACCCCCGAUGGGUGacGuGGGAGcCG- -5'
3583 5' -62 NC_001650.1 + 81835 0.76 0.201019
Target:  5'- gGGGGaGCUgGCCCGCgcggcgcGCGCCCUgugCGGCg -3'
miRNA:   3'- aCCCC-CGA-UGGGUGa------CGUGGGA---GCCG- -5'
3583 5' -62 NC_001650.1 + 133304 0.76 0.20582
Target:  5'- aGGGGGCUGCCCAggagGCGCCg--GGCg -3'
miRNA:   3'- aCCCCCGAUGGGUga--CGUGGgagCCG- -5'
3583 5' -62 NC_001650.1 + 24942 0.76 0.20582
Target:  5'- cGGGGGUccugcUGCCCuGCUGgGCCCagGGCa -3'
miRNA:   3'- aCCCCCG-----AUGGG-UGACgUGGGagCCG- -5'
3583 5' -62 NC_001650.1 + 88622 0.76 0.20582
Target:  5'- gGGGGGuCUACUC-CUGC-CCCggCGGCg -3'
miRNA:   3'- aCCCCC-GAUGGGuGACGuGGGa-GCCG- -5'
3583 5' -62 NC_001650.1 + 109280 0.75 0.231332
Target:  5'- gGGGGGCgcCCCGCUcGuCGCCCU-GGCc -3'
miRNA:   3'- aCCCCCGauGGGUGA-C-GUGGGAgCCG- -5'
3583 5' -62 NC_001650.1 + 155978 0.75 0.231332
Target:  5'- gUGGGGGCgGCCgUGCUGUGCCUgccCGGCu -3'
miRNA:   3'- -ACCCCCGaUGG-GUGACGUGGGa--GCCG- -5'
3583 5' -62 NC_001650.1 + 156431 0.75 0.236744
Target:  5'- gGGGGGCUgaucGCCUGCUGCgcggagaugGCCCU-GGCc -3'
miRNA:   3'- aCCCCCGA----UGGGUGACG---------UGGGAgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.