miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3583 5' -62 NC_001650.1 + 122147 0.7 0.432998
Target:  5'- cGGGGGCgGCgggagggggagaCgGCgGCGCCCUgGGCa -3'
miRNA:   3'- aCCCCCGaUG------------GgUGaCGUGGGAgCCG- -5'
3583 5' -62 NC_001650.1 + 142645 0.72 0.352931
Target:  5'- aGGGGGCUGCggCUGCUGCGgCCUCu-- -3'
miRNA:   3'- aCCCCCGAUG--GGUGACGUgGGAGccg -5'
3583 5' -62 NC_001650.1 + 11699 0.72 0.360451
Target:  5'- aGGGGGC-GCCCAgaGCACCCaccgaGaGCu -3'
miRNA:   3'- aCCCCCGaUGGGUgaCGUGGGag---C-CG- -5'
3583 5' -62 NC_001650.1 + 178406 0.72 0.360451
Target:  5'- aGGGGGC-GCCCAgaGCACCCaccgaGaGCu -3'
miRNA:   3'- aCCCCCGaUGGGUgaCGUGGGag---C-CG- -5'
3583 5' -62 NC_001650.1 + 35172 0.71 0.383675
Target:  5'- cGGGGGUggugcCCCACaccaGCACCCUggaccCGGUg -3'
miRNA:   3'- aCCCCCGau---GGGUGa---CGUGGGA-----GCCG- -5'
3583 5' -62 NC_001650.1 + 18089 0.71 0.416145
Target:  5'- cUGGGGGCUcuaACCUcugAUaugggggaagaaUGCcuCCCUCGGCg -3'
miRNA:   3'- -ACCCCCGA---UGGG---UG------------ACGu-GGGAGCCG- -5'
3583 5' -62 NC_001650.1 + 61322 0.71 0.416145
Target:  5'- cUGGGacaGGUUGCCCAgCUcCGCCCUCaGCa -3'
miRNA:   3'- -ACCC---CCGAUGGGU-GAcGUGGGAGcCG- -5'
3583 5' -62 NC_001650.1 + 50668 0.7 0.432998
Target:  5'- gGGGGGCcugaccuucUACCUGCUGCccgugACCCUggugaagccccaCGGCc -3'
miRNA:   3'- aCCCCCG---------AUGGGUGACG-----UGGGA------------GCCG- -5'
3583 5' -62 NC_001650.1 + 121590 0.7 0.432998
Target:  5'- cGGGGGCgGCggaggGCaGCGCCCUCGGg -3'
miRNA:   3'- aCCCCCGaUGgg---UGaCGUGGGAGCCg -5'
3583 5' -62 NC_001650.1 + 26553 0.72 0.338226
Target:  5'- gGGGGGCgagguguuCUCGCUGCcccuGCUCUCGGg -3'
miRNA:   3'- aCCCCCGau------GGGUGACG----UGGGAGCCg -5'
3583 5' -62 NC_001650.1 + 62878 0.73 0.323971
Target:  5'- aGGGGGCU--CCGgaGCACCCgggGGCg -3'
miRNA:   3'- aCCCCCGAugGGUgaCGUGGGag-CCG- -5'
3583 5' -62 NC_001650.1 + 52615 0.73 0.310169
Target:  5'- aUGGGGGCcacugGCCCGg-GggUCCUCGGCa -3'
miRNA:   3'- -ACCCCCGa----UGGGUgaCguGGGAGCCG- -5'
3583 5' -62 NC_001650.1 + 133304 0.76 0.20582
Target:  5'- aGGGGGCUGCCCAggagGCGCCg--GGCg -3'
miRNA:   3'- aCCCCCGAUGGGUga--CGUGGgagCCG- -5'
3583 5' -62 NC_001650.1 + 24942 0.76 0.20582
Target:  5'- cGGGGGUccugcUGCCCuGCUGgGCCCagGGCa -3'
miRNA:   3'- aCCCCCG-----AUGGG-UGACgUGGGagCCG- -5'
3583 5' -62 NC_001650.1 + 109280 0.75 0.231332
Target:  5'- gGGGGGCgcCCCGCUcGuCGCCCU-GGCc -3'
miRNA:   3'- aCCCCCGauGGGUGA-C-GUGGGAgCCG- -5'
3583 5' -62 NC_001650.1 + 129153 0.75 0.242262
Target:  5'- cGGGGGCgGCCCuCUuCGCCCUCucggaGGCg -3'
miRNA:   3'- aCCCCCGaUGGGuGAcGUGGGAG-----CCG- -5'
3583 5' -62 NC_001650.1 + 17159 0.74 0.25304
Target:  5'- aUGGGGGCUuCCCACUGagauggcCACCCccgaGGUg -3'
miRNA:   3'- -ACCCCCGAuGGGUGAC-------GUGGGag--CCG- -5'
3583 5' -62 NC_001650.1 + 183866 0.74 0.25304
Target:  5'- aUGGGGGCUuCCCACUGagauggcCACCCccgaGGUg -3'
miRNA:   3'- -ACCCCCGAuGGGUGAC-------GUGGGag--CCG- -5'
3583 5' -62 NC_001650.1 + 599 0.73 0.310169
Target:  5'- aGGGGGCgagGCCgGgCUGcCGCCCUCccccgGGCc -3'
miRNA:   3'- aCCCCCGa--UGGgU-GAC-GUGGGAG-----CCG- -5'
3583 5' -62 NC_001650.1 + 167306 0.73 0.310169
Target:  5'- aGGGGGCgagGCCgGgCUGcCGCCCUCccccgGGCc -3'
miRNA:   3'- aCCCCCGa--UGGgU-GAC-GUGGGAG-----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.