miRNA display CGI


Results 41 - 60 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3583 5' -62 NC_001650.1 + 23783 0.72 0.352931
Target:  5'- aUGGGGGCcaggGCCagGCUGaggaCGCUCUCGGUa -3'
miRNA:   3'- -ACCCCCGa---UGGg-UGAC----GUGGGAGCCG- -5'
3583 5' -62 NC_001650.1 + 142645 0.72 0.352931
Target:  5'- aGGGGGCUGCggCUGCUGCGgCCUCu-- -3'
miRNA:   3'- aCCCCCGAUG--GGUGACGUgGGAGccg -5'
3583 5' -62 NC_001650.1 + 11699 0.72 0.360451
Target:  5'- aGGGGGC-GCCCAgaGCACCCaccgaGaGCu -3'
miRNA:   3'- aCCCCCGaUGGGUgaCGUGGGag---C-CG- -5'
3583 5' -62 NC_001650.1 + 178406 0.72 0.360451
Target:  5'- aGGGGGC-GCCCAgaGCACCCaccgaGaGCu -3'
miRNA:   3'- aCCCCCGaUGGGUgaCGUGGGag---C-CG- -5'
3583 5' -62 NC_001650.1 + 8053 0.72 0.360451
Target:  5'- aGGGGGCggucggGCCa--UGCACCCagUGGCc -3'
miRNA:   3'- aCCCCCGa-----UGGgugACGUGGGa-GCCG- -5'
3583 5' -62 NC_001650.1 + 174760 0.72 0.360451
Target:  5'- aGGGGGCggucggGCCa--UGCACCCagUGGCc -3'
miRNA:   3'- aCCCCCGa-----UGGgugACGUGGGa-GCCG- -5'
3583 5' -62 NC_001650.1 + 5835 0.71 0.375824
Target:  5'- aGGGGGCcGCCCACUcUACCCUgugaccaaUGGg -3'
miRNA:   3'- aCCCCCGaUGGGUGAcGUGGGA--------GCCg -5'
3583 5' -62 NC_001650.1 + 172542 0.71 0.375824
Target:  5'- aGGGGGCcGCCCACUcUACCCUgugaccaaUGGg -3'
miRNA:   3'- aCCCCCGaUGGGUGAcGUGGGA--------GCCg -5'
3583 5' -62 NC_001650.1 + 173200 0.71 0.383675
Target:  5'- gGGGGaGUUGCCCACUaCcCCCUCuGCc -3'
miRNA:   3'- aCCCC-CGAUGGGUGAcGuGGGAGcCG- -5'
3583 5' -62 NC_001650.1 + 6493 0.71 0.383675
Target:  5'- gGGGGaGUUGCCCACUaCcCCCUCuGCc -3'
miRNA:   3'- aCCCC-CGAUGGGUGAcGuGGGAGcCG- -5'
3583 5' -62 NC_001650.1 + 35172 0.71 0.383675
Target:  5'- cGGGGGUggugcCCCACaccaGCACCCUggaccCGGUg -3'
miRNA:   3'- aCCCCCGau---GGGUGa---CGUGGGA-----GCCG- -5'
3583 5' -62 NC_001650.1 + 37453 0.71 0.397269
Target:  5'- cGGGGGCgcacuccacccgccUGCCCAauauguCUGCcagcCCCUCGGg -3'
miRNA:   3'- aCCCCCG--------------AUGGGU------GACGu---GGGAGCCg -5'
3583 5' -62 NC_001650.1 + 133151 0.71 0.399699
Target:  5'- cGGaGGGCUcGCgCCGCggggGgACCCUCGGg -3'
miRNA:   3'- aCC-CCCGA-UG-GGUGa---CgUGGGAGCCg -5'
3583 5' -62 NC_001650.1 + 18089 0.71 0.416145
Target:  5'- cUGGGGGCUcuaACCUcugAUaugggggaagaaUGCcuCCCUCGGCg -3'
miRNA:   3'- -ACCCCCGA---UGGG---UG------------ACGu-GGGAGCCG- -5'
3583 5' -62 NC_001650.1 + 61322 0.71 0.416145
Target:  5'- cUGGGacaGGUUGCCCAgCUcCGCCCUCaGCa -3'
miRNA:   3'- -ACCC---CCGAUGGGU-GAcGUGGGAGcCG- -5'
3583 5' -62 NC_001650.1 + 50668 0.7 0.432998
Target:  5'- gGGGGGCcugaccuucUACCUGCUGCccgugACCCUggugaagccccaCGGCc -3'
miRNA:   3'- aCCCCCG---------AUGGGUGACG-----UGGGA------------GCCG- -5'
3583 5' -62 NC_001650.1 + 121590 0.7 0.432998
Target:  5'- cGGGGGCgGCggaggGCaGCGCCCUCGGg -3'
miRNA:   3'- aCCCCCGaUGgg---UGaCGUGGGAGCCg -5'
3583 5' -62 NC_001650.1 + 122147 0.7 0.432998
Target:  5'- cGGGGGCgGCgggagggggagaCgGCgGCGCCCUgGGCa -3'
miRNA:   3'- aCCCCCGaUG------------GgUGaCGUGGGAgCCG- -5'
3583 5' -62 NC_001650.1 + 92902 0.7 0.441573
Target:  5'- aGGGcGCUGuCCCGCUGCACCUaCGa- -3'
miRNA:   3'- aCCCcCGAU-GGGUGACGUGGGaGCcg -5'
3583 5' -62 NC_001650.1 + 6778 0.7 0.441573
Target:  5'- aUGGGGGCUuagggguacuGCCCACUcUACuCCaUGGCc -3'
miRNA:   3'- -ACCCCCGA----------UGGGUGAcGUG-GGaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.