Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3584 | 3' | -53.5 | NC_001650.1 | + | 175234 | 0.67 | 0.9396 |
Target: 5'- -gGCuAUGGGGGUGUguggguggugGGCUAcuguCCAAUa -3' miRNA: 3'- uaCG-UACCCCCACAa---------UCGGUu---GGUUG- -5' |
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3584 | 3' | -53.5 | NC_001650.1 | + | 145846 | 0.67 | 0.9396 |
Target: 5'- -gGC-UGGGGGUGcccuucaacaUAGCCAGCUAc- -3' miRNA: 3'- uaCGuACCCCCACa---------AUCGGUUGGUug -5' |
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3584 | 3' | -53.5 | NC_001650.1 | + | 8527 | 0.67 | 0.9396 |
Target: 5'- -gGCuAUGGGGGUGUguggguggugGGCUAcuguCCAAUa -3' miRNA: 3'- uaCG-UACCCCCACAa---------UCGGUu---GGUUG- -5' |
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3584 | 3' | -53.5 | NC_001650.1 | + | 121101 | 0.67 | 0.9396 |
Target: 5'- gGUGCuUGGGGGcGUUGucgcgcGCCGcccCCAGCg -3' miRNA: 3'- -UACGuACCCCCaCAAU------CGGUu--GGUUG- -5' |
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3584 | 3' | -53.5 | NC_001650.1 | + | 116466 | 0.67 | 0.944326 |
Target: 5'- cUGCAcgGGcGGGUGUccgaGGCCAagACCAGg -3' miRNA: 3'- uACGUa-CC-CCCACAa---UCGGU--UGGUUg -5' |
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3584 | 3' | -53.5 | NC_001650.1 | + | 117989 | 0.67 | 0.948803 |
Target: 5'- -aGCGggagaGGGGGaGggcGCCGACCGGCu -3' miRNA: 3'- uaCGUa----CCCCCaCaauCGGUUGGUUG- -5' |
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3584 | 3' | -53.5 | NC_001650.1 | + | 57602 | 0.67 | 0.948803 |
Target: 5'- -cGCA-GGGGGUGggggAGCCGcagGCCccACa -3' miRNA: 3'- uaCGUaCCCCCACaa--UCGGU---UGGu-UG- -5' |
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3584 | 3' | -53.5 | NC_001650.1 | + | 132263 | 0.67 | 0.948803 |
Target: 5'- -cGCGUcGGGgacGGUGUUgggguacucGGCCGcgGCCAGCg -3' miRNA: 3'- uaCGUA-CCC---CCACAA---------UCGGU--UGGUUG- -5' |
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3584 | 3' | -53.5 | NC_001650.1 | + | 105282 | 0.66 | 0.957025 |
Target: 5'- -gGCAucUGGGGGUGgUGGCgGuuCCAAg -3' miRNA: 3'- uaCGU--ACCCCCACaAUCGgUu-GGUUg -5' |
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3584 | 3' | -53.5 | NC_001650.1 | + | 27975 | 0.68 | 0.912191 |
Target: 5'- -cGCAcaUGGGcGUGUUGGCCGcgguGCCcACg -3' miRNA: 3'- uaCGU--ACCCcCACAAUCGGU----UGGuUG- -5' |
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3584 | 3' | -53.5 | NC_001650.1 | + | 70003 | 0.69 | 0.885765 |
Target: 5'- -----aGGGGGUGUgaccGCCAACCugGACg -3' miRNA: 3'- uacguaCCCCCACAau--CGGUUGG--UUG- -5' |
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3584 | 3' | -53.5 | NC_001650.1 | + | 7853 | 1.07 | 0.006489 |
Target: 5'- uAUGCAUGGGGGUGUUAGCCAACCAACc -3' miRNA: 3'- -UACGUACCCCCACAAUCGGUUGGUUG- -5' |
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3584 | 3' | -53.5 | NC_001650.1 | + | 175480 | 0.73 | 0.685257 |
Target: 5'- -aGCGUGGGGGUGUgagGGaCCGAuUCAAa -3' miRNA: 3'- uaCGUACCCCCACAa--UC-GGUU-GGUUg -5' |
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3584 | 3' | -53.5 | NC_001650.1 | + | 8774 | 0.73 | 0.685257 |
Target: 5'- -aGCGUGGGGGUGUgagGGaCCGAuUCAAa -3' miRNA: 3'- uaCGUACCCCCACAa--UC-GGUU-GGUUg -5' |
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3584 | 3' | -53.5 | NC_001650.1 | + | 174767 | 0.7 | 0.821934 |
Target: 5'- uAUGCAUaGGGGGcgGUcgGGCCAugCAc- -3' miRNA: 3'- -UACGUA-CCCCCa-CAa-UCGGUugGUug -5' |
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3584 | 3' | -53.5 | NC_001650.1 | + | 8060 | 0.7 | 0.821934 |
Target: 5'- uAUGCAUaGGGGGcgGUcgGGCCAugCAc- -3' miRNA: 3'- -UACGUA-CCCCCa-CAa-UCGGUugGUug -5' |
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3584 | 3' | -53.5 | NC_001650.1 | + | 90236 | 0.7 | 0.844153 |
Target: 5'- -gGCAUcGGGGGcgcgcgcuccGGCCGACCGGCg -3' miRNA: 3'- uaCGUA-CCCCCacaa------UCGGUUGGUUG- -5' |
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3584 | 3' | -53.5 | NC_001650.1 | + | 24019 | 0.69 | 0.855556 |
Target: 5'- -cGCA-GGGGGUGUaGGCgaaGGCCGAg -3' miRNA: 3'- uaCGUaCCCCCACAaUCGg--UUGGUUg -5' |
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3584 | 3' | -53.5 | NC_001650.1 | + | 127387 | 0.69 | 0.878556 |
Target: 5'- -gGCcgAUGGGGG-GUUGGCCAAaacaAGCa -3' miRNA: 3'- uaCG--UACCCCCaCAAUCGGUUgg--UUG- -5' |
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3584 | 3' | -53.5 | NC_001650.1 | + | 93595 | 0.69 | 0.878556 |
Target: 5'- -aGgGUGGGGGUGcccaucUUGGCCAGCg--- -3' miRNA: 3'- uaCgUACCCCCAC------AAUCGGUUGguug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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