Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3584 | 3' | -53.5 | NC_001650.1 | + | 145407 | 0.86 | 0.133367 |
Target: 5'- -cGCGUGGGGGUGgUAGCCcuCCAGCg -3' miRNA: 3'- uaCGUACCCCCACaAUCGGuuGGUUG- -5' |
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3584 | 3' | -53.5 | NC_001650.1 | + | 82637 | 0.68 | 0.918178 |
Target: 5'- gGUGCGaguuUGGGGGcGggAGCCAugUGAa -3' miRNA: 3'- -UACGU----ACCCCCaCaaUCGGUugGUUg -5' |
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3584 | 3' | -53.5 | NC_001650.1 | + | 130065 | 0.68 | 0.92335 |
Target: 5'- cGUGCA-GGGGGUGgagagGGCCGgggaggggggagaGCCGc- -3' miRNA: 3'- -UACGUaCCCCCACaa---UCGGU-------------UGGUug -5' |
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3584 | 3' | -53.5 | NC_001650.1 | + | 87802 | 0.67 | 0.929394 |
Target: 5'- gGUGUGUGGGuGaGUGaUGGCaggAGCCAGCa -3' miRNA: 3'- -UACGUACCC-C-CACaAUCGg--UUGGUUG- -5' |
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3584 | 3' | -53.5 | NC_001650.1 | + | 35167 | 0.67 | 0.934623 |
Target: 5'- -cGCcgcGGGGGUGgu-GCCccacACCAGCa -3' miRNA: 3'- uaCGua-CCCCCACaauCGGu---UGGUUG- -5' |
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3584 | 3' | -53.5 | NC_001650.1 | + | 110472 | 0.67 | 0.948803 |
Target: 5'- cUGaCAUGGaGGUGg-AGCCGGCCAGg -3' miRNA: 3'- uAC-GUACCcCCACaaUCGGUUGGUUg -5' |
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3584 | 3' | -53.5 | NC_001650.1 | + | 73416 | 0.66 | 0.953035 |
Target: 5'- ---gGUGGGGGcGgcccagGGCCAGCaCAACg -3' miRNA: 3'- uacgUACCCCCaCaa----UCGGUUG-GUUG- -5' |
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3584 | 3' | -53.5 | NC_001650.1 | + | 89757 | 0.66 | 0.964296 |
Target: 5'- uUGCGUGGGgcuGGUGUcugGGUaCGGCCGAg -3' miRNA: 3'- uACGUACCC---CCACAa--UCG-GUUGGUUg -5' |
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3584 | 3' | -53.5 | NC_001650.1 | + | 47854 | 0.66 | 0.966948 |
Target: 5'- cAUGCuugaGGGGGUGUUucugggcauaguGCUGACCAu- -3' miRNA: 3'- -UACGua--CCCCCACAAu-----------CGGUUGGUug -5' |
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3584 | 3' | -53.5 | NC_001650.1 | + | 53392 | 0.68 | 0.918178 |
Target: 5'- -cGCGcGGGGGUuuccggagagGUcggGGUCAACCGGCg -3' miRNA: 3'- uaCGUaCCCCCA----------CAa--UCGGUUGGUUG- -5' |
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3584 | 3' | -53.5 | NC_001650.1 | + | 31255 | 0.68 | 0.918178 |
Target: 5'- -gGCGaaGGGGGcGgaGGCCAuuGCCGACg -3' miRNA: 3'- uaCGUa-CCCCCaCaaUCGGU--UGGUUG- -5' |
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3584 | 3' | -53.5 | NC_001650.1 | + | 133222 | 0.74 | 0.632816 |
Target: 5'- -gGCGUGGGGGcUGggAGCgGGCCGc- -3' miRNA: 3'- uaCGUACCCCC-ACaaUCGgUUGGUug -5' |
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3584 | 3' | -53.5 | NC_001650.1 | + | 128267 | 0.7 | 0.80945 |
Target: 5'- cGUGCccgaGGGGGUGgggcccauggagAGCCAGCCGGg -3' miRNA: 3'- -UACGua--CCCCCACaa----------UCGGUUGGUUg -5' |
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3584 | 3' | -53.5 | NC_001650.1 | + | 128551 | 0.7 | 0.813052 |
Target: 5'- --aCAUGGGGGgcgagcUGgcGGCCAucGCCAACg -3' miRNA: 3'- uacGUACCCCC------ACaaUCGGU--UGGUUG- -5' |
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3584 | 3' | -53.5 | NC_001650.1 | + | 131826 | 0.7 | 0.821934 |
Target: 5'- -gGCcgGGGcGGUGgccGGCC-GCCGACg -3' miRNA: 3'- uaCGuaCCC-CCACaa-UCGGuUGGUUG- -5' |
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3584 | 3' | -53.5 | NC_001650.1 | + | 118556 | 0.69 | 0.863445 |
Target: 5'- -cGCAUGaccGGGGUGgcgcAGCUcACCAGCu -3' miRNA: 3'- uaCGUAC---CCCCACaa--UCGGuUGGUUG- -5' |
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3584 | 3' | -53.5 | NC_001650.1 | + | 76162 | 0.69 | 0.885765 |
Target: 5'- -aGCAgauacGGGGUGacGGCCAucuACCAACa -3' miRNA: 3'- uaCGUac---CCCCACaaUCGGU---UGGUUG- -5' |
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3584 | 3' | -53.5 | NC_001650.1 | + | 63420 | 0.68 | 0.912191 |
Target: 5'- uGUGCAUGGGGGaGgaGGaCAACCu-- -3' miRNA: 3'- -UACGUACCCCCaCaaUCgGUUGGuug -5' |
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3584 | 3' | -53.5 | NC_001650.1 | + | 22355 | 0.68 | 0.918178 |
Target: 5'- cUGCAccUGGGGGUGgUGGgCAGCgGGg -3' miRNA: 3'- uACGU--ACCCCCACaAUCgGUUGgUUg -5' |
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3584 | 3' | -53.5 | NC_001650.1 | + | 1275 | 0.66 | 0.967588 |
Target: 5'- -gGCccGGGGGUG--GGCCcAACCGc- -3' miRNA: 3'- uaCGuaCCCCCACaaUCGG-UUGGUug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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