miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3584 3' -53.5 NC_001650.1 + 1275 0.66 0.967588
Target:  5'- -gGCccGGGGGUG--GGCCcAACCGc- -3'
miRNA:   3'- uaCGuaCCCCCACaaUCGG-UUGGUug -5'
3584 3' -53.5 NC_001650.1 + 7853 1.07 0.006489
Target:  5'- uAUGCAUGGGGGUGUUAGCCAACCAACc -3'
miRNA:   3'- -UACGUACCCCCACAAUCGGUUGGUUG- -5'
3584 3' -53.5 NC_001650.1 + 8060 0.7 0.821934
Target:  5'- uAUGCAUaGGGGGcgGUcgGGCCAugCAc- -3'
miRNA:   3'- -UACGUA-CCCCCa-CAa-UCGGUugGUug -5'
3584 3' -53.5 NC_001650.1 + 8527 0.67 0.9396
Target:  5'- -gGCuAUGGGGGUGUguggguggugGGCUAcuguCCAAUa -3'
miRNA:   3'- uaCG-UACCCCCACAa---------UCGGUu---GGUUG- -5'
3584 3' -53.5 NC_001650.1 + 8774 0.73 0.685257
Target:  5'- -aGCGUGGGGGUGUgagGGaCCGAuUCAAa -3'
miRNA:   3'- uaCGUACCCCCACAa--UC-GGUU-GGUUg -5'
3584 3' -53.5 NC_001650.1 + 17006 0.66 0.964296
Target:  5'- uGUGCAUGaGGGG-GUcAGCCAugUu-- -3'
miRNA:   3'- -UACGUAC-CCCCaCAaUCGGUugGuug -5'
3584 3' -53.5 NC_001650.1 + 22355 0.68 0.918178
Target:  5'- cUGCAccUGGGGGUGgUGGgCAGCgGGg -3'
miRNA:   3'- uACGU--ACCCCCACaAUCgGUUGgUUg -5'
3584 3' -53.5 NC_001650.1 + 24019 0.69 0.855556
Target:  5'- -cGCA-GGGGGUGUaGGCgaaGGCCGAg -3'
miRNA:   3'- uaCGUaCCCCCACAaUCGg--UUGGUUg -5'
3584 3' -53.5 NC_001650.1 + 27975 0.68 0.912191
Target:  5'- -cGCAcaUGGGcGUGUUGGCCGcgguGCCcACg -3'
miRNA:   3'- uaCGU--ACCCcCACAAUCGGU----UGGuUG- -5'
3584 3' -53.5 NC_001650.1 + 31255 0.68 0.918178
Target:  5'- -gGCGaaGGGGGcGgaGGCCAuuGCCGACg -3'
miRNA:   3'- uaCGUa-CCCCCaCaaUCGGU--UGGUUG- -5'
3584 3' -53.5 NC_001650.1 + 35167 0.67 0.934623
Target:  5'- -cGCcgcGGGGGUGgu-GCCccacACCAGCa -3'
miRNA:   3'- uaCGua-CCCCCACaauCGGu---UGGUUG- -5'
3584 3' -53.5 NC_001650.1 + 47854 0.66 0.966948
Target:  5'- cAUGCuugaGGGGGUGUUucugggcauaguGCUGACCAu- -3'
miRNA:   3'- -UACGua--CCCCCACAAu-----------CGGUUGGUug -5'
3584 3' -53.5 NC_001650.1 + 53392 0.68 0.918178
Target:  5'- -cGCGcGGGGGUuuccggagagGUcggGGUCAACCGGCg -3'
miRNA:   3'- uaCGUaCCCCCA----------CAa--UCGGUUGGUUG- -5'
3584 3' -53.5 NC_001650.1 + 57602 0.67 0.948803
Target:  5'- -cGCA-GGGGGUGggggAGCCGcagGCCccACa -3'
miRNA:   3'- uaCGUaCCCCCACaa--UCGGU---UGGu-UG- -5'
3584 3' -53.5 NC_001650.1 + 63420 0.68 0.912191
Target:  5'- uGUGCAUGGGGGaGgaGGaCAACCu-- -3'
miRNA:   3'- -UACGUACCCCCaCaaUCgGUUGGuug -5'
3584 3' -53.5 NC_001650.1 + 70003 0.69 0.885765
Target:  5'- -----aGGGGGUGUgaccGCCAACCugGACg -3'
miRNA:   3'- uacguaCCCCCACAau--CGGUUGG--UUG- -5'
3584 3' -53.5 NC_001650.1 + 73416 0.66 0.953035
Target:  5'- ---gGUGGGGGcGgcccagGGCCAGCaCAACg -3'
miRNA:   3'- uacgUACCCCCaCaa----UCGGUUG-GUUG- -5'
3584 3' -53.5 NC_001650.1 + 76162 0.69 0.885765
Target:  5'- -aGCAgauacGGGGUGacGGCCAucuACCAACa -3'
miRNA:   3'- uaCGUac---CCCCACaaUCGGU---UGGUUG- -5'
3584 3' -53.5 NC_001650.1 + 82637 0.68 0.918178
Target:  5'- gGUGCGaguuUGGGGGcGggAGCCAugUGAa -3'
miRNA:   3'- -UACGU----ACCCCCaCaaUCGGUugGUUg -5'
3584 3' -53.5 NC_001650.1 + 87802 0.67 0.929394
Target:  5'- gGUGUGUGGGuGaGUGaUGGCaggAGCCAGCa -3'
miRNA:   3'- -UACGUACCC-C-CACaAUCGg--UUGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.