miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3584 3' -53.5 NC_001650.1 + 7853 1.07 0.006489
Target:  5'- uAUGCAUGGGGGUGUUAGCCAACCAACc -3'
miRNA:   3'- -UACGUACCCCCACAAUCGGUUGGUUG- -5'
3584 3' -53.5 NC_001650.1 + 174560 1.07 0.006489
Target:  5'- uAUGCAUGGGGGUGUUAGCCAACCAACc -3'
miRNA:   3'- -UACGUACCCCCACAAUCGGUUGGUUG- -5'
3584 3' -53.5 NC_001650.1 + 145407 0.86 0.133367
Target:  5'- -cGCGUGGGGGUGgUAGCCcuCCAGCg -3'
miRNA:   3'- uaCGUACCCCCACaAUCGGuuGGUUG- -5'
3584 3' -53.5 NC_001650.1 + 133222 0.74 0.632816
Target:  5'- -gGCGUGGGGGcUGggAGCgGGCCGc- -3'
miRNA:   3'- uaCGUACCCCC-ACaaUCGgUUGGUug -5'
3584 3' -53.5 NC_001650.1 + 8774 0.73 0.685257
Target:  5'- -aGCGUGGGGGUGUgagGGaCCGAuUCAAa -3'
miRNA:   3'- uaCGUACCCCCACAa--UC-GGUU-GGUUg -5'
3584 3' -53.5 NC_001650.1 + 175480 0.73 0.685257
Target:  5'- -aGCGUGGGGGUGUgagGGaCCGAuUCAAa -3'
miRNA:   3'- uaCGUACCCCCACAa--UC-GGUU-GGUUg -5'
3584 3' -53.5 NC_001650.1 + 128267 0.7 0.80945
Target:  5'- cGUGCccgaGGGGGUGgggcccauggagAGCCAGCCGGg -3'
miRNA:   3'- -UACGua--CCCCCACaa----------UCGGUUGGUUg -5'
3584 3' -53.5 NC_001650.1 + 128551 0.7 0.813052
Target:  5'- --aCAUGGGGGgcgagcUGgcGGCCAucGCCAACg -3'
miRNA:   3'- uacGUACCCCC------ACaaUCGGU--UGGUUG- -5'
3584 3' -53.5 NC_001650.1 + 174767 0.7 0.821934
Target:  5'- uAUGCAUaGGGGGcgGUcgGGCCAugCAc- -3'
miRNA:   3'- -UACGUA-CCCCCa-CAa-UCGGUugGUug -5'
3584 3' -53.5 NC_001650.1 + 131826 0.7 0.821934
Target:  5'- -gGCcgGGGcGGUGgccGGCC-GCCGACg -3'
miRNA:   3'- uaCGuaCCC-CCACaa-UCGGuUGGUUG- -5'
3584 3' -53.5 NC_001650.1 + 8060 0.7 0.821934
Target:  5'- uAUGCAUaGGGGGcgGUcgGGCCAugCAc- -3'
miRNA:   3'- -UACGUA-CCCCCa-CAa-UCGGUugGUug -5'
3584 3' -53.5 NC_001650.1 + 90236 0.7 0.844153
Target:  5'- -gGCAUcGGGGGcgcgcgcuccGGCCGACCGGCg -3'
miRNA:   3'- uaCGUA-CCCCCacaa------UCGGUUGGUUG- -5'
3584 3' -53.5 NC_001650.1 + 24019 0.69 0.855556
Target:  5'- -cGCA-GGGGGUGUaGGCgaaGGCCGAg -3'
miRNA:   3'- uaCGUaCCCCCACAaUCGg--UUGGUUg -5'
3584 3' -53.5 NC_001650.1 + 118556 0.69 0.863445
Target:  5'- -cGCAUGaccGGGGUGgcgcAGCUcACCAGCu -3'
miRNA:   3'- uaCGUAC---CCCCACaa--UCGGuUGGUUG- -5'
3584 3' -53.5 NC_001650.1 + 127387 0.69 0.878556
Target:  5'- -gGCcgAUGGGGG-GUUGGCCAAaacaAGCa -3'
miRNA:   3'- uaCG--UACCCCCaCAAUCGGUUgg--UUG- -5'
3584 3' -53.5 NC_001650.1 + 93595 0.69 0.878556
Target:  5'- -aGgGUGGGGGUGcccaucUUGGCCAGCg--- -3'
miRNA:   3'- uaCgUACCCCCAC------AAUCGGUUGguug -5'
3584 3' -53.5 NC_001650.1 + 76162 0.69 0.885765
Target:  5'- -aGCAgauacGGGGUGacGGCCAucuACCAACa -3'
miRNA:   3'- uaCGUac---CCCCACaaUCGGU---UGGUUG- -5'
3584 3' -53.5 NC_001650.1 + 70003 0.69 0.885765
Target:  5'- -----aGGGGGUGUgaccGCCAACCugGACg -3'
miRNA:   3'- uacguaCCCCCACAau--CGGUUGG--UUG- -5'
3584 3' -53.5 NC_001650.1 + 27975 0.68 0.912191
Target:  5'- -cGCAcaUGGGcGUGUUGGCCGcgguGCCcACg -3'
miRNA:   3'- uaCGU--ACCCcCACAAUCGGU----UGGuUG- -5'
3584 3' -53.5 NC_001650.1 + 63420 0.68 0.912191
Target:  5'- uGUGCAUGGGGGaGgaGGaCAACCu-- -3'
miRNA:   3'- -UACGUACCCCCaCaaUCgGUUGGuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.