miRNA display CGI


Results 1 - 20 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3584 3' -53.5 NC_001650.1 + 183713 0.66 0.964296
Target:  5'- uGUGCAUGaGGGG-GUcAGCCAugUu-- -3'
miRNA:   3'- -UACGUAC-CCCCaCAaUCGGUugGuug -5'
3584 3' -53.5 NC_001650.1 + 175480 0.73 0.685257
Target:  5'- -aGCGUGGGGGUGUgagGGaCCGAuUCAAa -3'
miRNA:   3'- uaCGUACCCCCACAa--UC-GGUU-GGUUg -5'
3584 3' -53.5 NC_001650.1 + 175234 0.67 0.9396
Target:  5'- -gGCuAUGGGGGUGUguggguggugGGCUAcuguCCAAUa -3'
miRNA:   3'- uaCG-UACCCCCACAa---------UCGGUu---GGUUG- -5'
3584 3' -53.5 NC_001650.1 + 174767 0.7 0.821934
Target:  5'- uAUGCAUaGGGGGcgGUcgGGCCAugCAc- -3'
miRNA:   3'- -UACGUA-CCCCCa-CAa-UCGGUugGUug -5'
3584 3' -53.5 NC_001650.1 + 174560 1.07 0.006489
Target:  5'- uAUGCAUGGGGGUGUUAGCCAACCAACc -3'
miRNA:   3'- -UACGUACCCCCACAAUCGGUUGGUUG- -5'
3584 3' -53.5 NC_001650.1 + 167982 0.66 0.967588
Target:  5'- -gGCccGGGGGUG--GGCCcAACCGc- -3'
miRNA:   3'- uaCGuaCCCCCACaaUCGG-UUGGUug -5'
3584 3' -53.5 NC_001650.1 + 145846 0.67 0.9396
Target:  5'- -gGC-UGGGGGUGcccuucaacaUAGCCAGCUAc- -3'
miRNA:   3'- uaCGuACCCCCACa---------AUCGGUUGGUug -5'
3584 3' -53.5 NC_001650.1 + 145407 0.86 0.133367
Target:  5'- -cGCGUGGGGGUGgUAGCCcuCCAGCg -3'
miRNA:   3'- uaCGUACCCCCACaAUCGGuuGGUUG- -5'
3584 3' -53.5 NC_001650.1 + 141859 0.67 0.933081
Target:  5'- -gGCcUGGGGGUGUUuugcuucgcgcgggGGCCcccgaGGCCGAa -3'
miRNA:   3'- uaCGuACCCCCACAA--------------UCGG-----UUGGUUg -5'
3584 3' -53.5 NC_001650.1 + 133222 0.74 0.632816
Target:  5'- -gGCGUGGGGGcUGggAGCgGGCCGc- -3'
miRNA:   3'- uaCGUACCCCC-ACaaUCGgUUGGUug -5'
3584 3' -53.5 NC_001650.1 + 132263 0.67 0.948803
Target:  5'- -cGCGUcGGGgacGGUGUUgggguacucGGCCGcgGCCAGCg -3'
miRNA:   3'- uaCGUA-CCC---CCACAA---------UCGGU--UGGUUG- -5'
3584 3' -53.5 NC_001650.1 + 131826 0.7 0.821934
Target:  5'- -gGCcgGGGcGGUGgccGGCC-GCCGACg -3'
miRNA:   3'- uaCGuaCCC-CCACaa-UCGGuUGGUUG- -5'
3584 3' -53.5 NC_001650.1 + 130065 0.68 0.92335
Target:  5'- cGUGCA-GGGGGUGgagagGGCCGgggaggggggagaGCCGc- -3'
miRNA:   3'- -UACGUaCCCCCACaa---UCGGU-------------UGGUug -5'
3584 3' -53.5 NC_001650.1 + 128551 0.7 0.813052
Target:  5'- --aCAUGGGGGgcgagcUGgcGGCCAucGCCAACg -3'
miRNA:   3'- uacGUACCCCC------ACaaUCGGU--UGGUUG- -5'
3584 3' -53.5 NC_001650.1 + 128267 0.7 0.80945
Target:  5'- cGUGCccgaGGGGGUGgggcccauggagAGCCAGCCGGg -3'
miRNA:   3'- -UACGua--CCCCCACaa----------UCGGUUGGUUg -5'
3584 3' -53.5 NC_001650.1 + 127387 0.69 0.878556
Target:  5'- -gGCcgAUGGGGG-GUUGGCCAAaacaAGCa -3'
miRNA:   3'- uaCG--UACCCCCaCAAUCGGUUgg--UUG- -5'
3584 3' -53.5 NC_001650.1 + 121101 0.67 0.9396
Target:  5'- gGUGCuUGGGGGcGUUGucgcgcGCCGcccCCAGCg -3'
miRNA:   3'- -UACGuACCCCCaCAAU------CGGUu--GGUUG- -5'
3584 3' -53.5 NC_001650.1 + 118556 0.69 0.863445
Target:  5'- -cGCAUGaccGGGGUGgcgcAGCUcACCAGCu -3'
miRNA:   3'- uaCGUAC---CCCCACaa--UCGGuUGGUUG- -5'
3584 3' -53.5 NC_001650.1 + 117989 0.67 0.948803
Target:  5'- -aGCGggagaGGGGGaGggcGCCGACCGGCu -3'
miRNA:   3'- uaCGUa----CCCCCaCaauCGGUUGGUUG- -5'
3584 3' -53.5 NC_001650.1 + 116466 0.67 0.944326
Target:  5'- cUGCAcgGGcGGGUGUccgaGGCCAagACCAGg -3'
miRNA:   3'- uACGUa-CC-CCCACAa---UCGGU--UGGUUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.