miRNA display CGI


Results 61 - 80 of 312 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3584 5' -59.5 NC_001650.1 + 121668 0.66 0.805036
Target:  5'- aCGAccUGGC-GGCCACCUucaaggcgGCCUCAgagUCCa -3'
miRNA:   3'- gGUU--ACCGcCCGGUGGG--------UGGAGU---GGG- -5'
3584 5' -59.5 NC_001650.1 + 127759 0.66 0.805036
Target:  5'- -gGGUGGUcacGGGCCcgGCCCACC-CcUCCa -3'
miRNA:   3'- ggUUACCG---CCCGG--UGGGUGGaGuGGG- -5'
3584 5' -59.5 NC_001650.1 + 25067 0.66 0.804187
Target:  5'- gCCA---GCGGGCCcgccaugGCCUACCcCGCCa -3'
miRNA:   3'- -GGUuacCGCCCGG-------UGGGUGGaGUGGg -5'
3584 5' -59.5 NC_001650.1 + 16513 0.67 0.799921
Target:  5'- aCCAagAUGGCcaccccaccaagauGGCCACCCcACCaagauggcCACCCa -3'
miRNA:   3'- -GGU--UACCGc-------------CCGGUGGG-UGGa-------GUGGG- -5'
3584 5' -59.5 NC_001650.1 + 183220 0.67 0.799921
Target:  5'- aCCAagAUGGCcaccccaccaagauGGCCACCCcACCaagauggcCACCCa -3'
miRNA:   3'- -GGU--UACCGc-------------CCGGUGGG-UGGa-------GUGGG- -5'
3584 5' -59.5 NC_001650.1 + 141398 0.67 0.796484
Target:  5'- uCCAGgguccGGCGGGCCggggucACCCAgagUUCGCgCCa -3'
miRNA:   3'- -GGUUa----CCGCCCGG------UGGGUg--GAGUG-GG- -5'
3584 5' -59.5 NC_001650.1 + 47337 0.67 0.796484
Target:  5'- -aGAUGGagccCGGGUCGCCCcGCCcgagCGCCUc -3'
miRNA:   3'- ggUUACC----GCCCGGUGGG-UGGa---GUGGG- -5'
3584 5' -59.5 NC_001650.1 + 174487 0.67 0.796484
Target:  5'- cCCGAUGcauaugcaGUGaGuCCACCCACCUUagucuGCCCa -3'
miRNA:   3'- -GGUUAC--------CGCcC-GGUGGGUGGAG-----UGGG- -5'
3584 5' -59.5 NC_001650.1 + 7780 0.67 0.796484
Target:  5'- cCCGAUGcauaugcaGUGaGuCCACCCACCUUagucuGCCCa -3'
miRNA:   3'- -GGUUAC--------CGCcC-GGUGGGUGGAG-----UGGG- -5'
3584 5' -59.5 NC_001650.1 + 74740 0.67 0.795621
Target:  5'- aCGGUGGCGGccucccuGCCAaaCACCgggggCACCa -3'
miRNA:   3'- gGUUACCGCC-------CGGUggGUGGa----GUGGg -5'
3584 5' -59.5 NC_001650.1 + 39797 0.67 0.791286
Target:  5'- aCAccGGUGGGCCACCgCguggagccugggcgcAUCUCGCgCg -3'
miRNA:   3'- gGUuaCCGCCCGGUGG-G---------------UGGAGUGgG- -5'
3584 5' -59.5 NC_001650.1 + 108750 0.67 0.787795
Target:  5'- cCCAGccgcGGCGGGagGcCCCGCCUCuauuGCCUc -3'
miRNA:   3'- -GGUUa---CCGCCCggU-GGGUGGAG----UGGG- -5'
3584 5' -59.5 NC_001650.1 + 16281 0.67 0.787795
Target:  5'- cCCAuUGGgguuaGGGuCCACCCACUaaaauggcUgACCCu -3'
miRNA:   3'- -GGUuACCg----CCC-GGUGGGUGG--------AgUGGG- -5'
3584 5' -59.5 NC_001650.1 + 182988 0.67 0.787795
Target:  5'- cCCAuUGGgguuaGGGuCCACCCACUaaaauggcUgACCCu -3'
miRNA:   3'- -GGUuACCg----CCC-GGUGGGUGG--------AgUGGG- -5'
3584 5' -59.5 NC_001650.1 + 11430 0.67 0.787795
Target:  5'- -----cGCGcGCCACCCAgCC-CACCCa -3'
miRNA:   3'- gguuacCGCcCGGUGGGU-GGaGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 122057 0.67 0.787795
Target:  5'- ----cGGCGGGgCugGCCCACaucaggCGCCCc -3'
miRNA:   3'- gguuaCCGCCCgG--UGGGUGga----GUGGG- -5'
3584 5' -59.5 NC_001650.1 + 178137 0.67 0.787795
Target:  5'- -----cGCGcGCCACCCAgCC-CACCCa -3'
miRNA:   3'- gguuacCGCcCGGUGGGU-GGaGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 5619 0.67 0.786919
Target:  5'- cCCAuUGGUcacaggguagaguGGGCgGCCC-CCUUagACCCc -3'
miRNA:   3'- -GGUuACCG-------------CCCGgUGGGuGGAG--UGGG- -5'
3584 5' -59.5 NC_001650.1 + 172326 0.67 0.786919
Target:  5'- cCCAuUGGUcacaggguagaguGGGCgGCCC-CCUUagACCCc -3'
miRNA:   3'- -GGUuACCG-------------CCCGgUGGGuGGAG--UGGG- -5'
3584 5' -59.5 NC_001650.1 + 128489 0.67 0.786919
Target:  5'- cCCGGcUGGCucuccauGGGCCccACCC-CCUCgggcacggGCCCg -3'
miRNA:   3'- -GGUU-ACCG-------CCCGG--UGGGuGGAG--------UGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.