miRNA display CGI


Results 41 - 60 of 312 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3584 5' -59.5 NC_001650.1 + 15214 0.66 0.829805
Target:  5'- gCCGca-GCGGGCUcCCCcCUUCACCg -3'
miRNA:   3'- -GGUuacCGCCCGGuGGGuGGAGUGGg -5'
3584 5' -59.5 NC_001650.1 + 61706 0.66 0.829002
Target:  5'- cCCGAUgcaGGCGgccaggaaaagauGGCCGCCaGCgUCGCCUu -3'
miRNA:   3'- -GGUUA---CCGC-------------CCGGUGGgUGgAGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 48489 0.66 0.829002
Target:  5'- aCCAGcuUGGCccugugggcuaggGGGCUAgCCGCCUggaagcaGCCCc -3'
miRNA:   3'- -GGUU--ACCG-------------CCCGGUgGGUGGAg------UGGG- -5'
3584 5' -59.5 NC_001650.1 + 32169 0.66 0.821704
Target:  5'- gUCGggGGCGGGCCucGCgUCGuCCUCugUCu -3'
miRNA:   3'- -GGUuaCCGCCCGG--UG-GGU-GGAGugGG- -5'
3584 5' -59.5 NC_001650.1 + 29858 0.66 0.821704
Target:  5'- cCCA--GG-GGGUCcUCCuCCUCGCCCa -3'
miRNA:   3'- -GGUuaCCgCCCGGuGGGuGGAGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 52814 0.66 0.821704
Target:  5'- gCAGgacgGGCGcGGCguucucggCGCCCugCcCGCCCu -3'
miRNA:   3'- gGUUa---CCGC-CCG--------GUGGGugGaGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 119122 0.66 0.821704
Target:  5'- cCCAGauGCGcGGCCGCCauuuuucacuCACCUCcugcuACCCc -3'
miRNA:   3'- -GGUUacCGC-CCGGUGG----------GUGGAG-----UGGG- -5'
3584 5' -59.5 NC_001650.1 + 23800 0.66 0.821704
Target:  5'- uCCuuuGUGGCcucGGCC-UUCGCCUaCACCCc -3'
miRNA:   3'- -GGu--UACCGc--CCGGuGGGUGGA-GUGGG- -5'
3584 5' -59.5 NC_001650.1 + 121396 0.66 0.813445
Target:  5'- cCCGGccGGgGGcGCCGCCUcgcGCCUCAagcaCCu -3'
miRNA:   3'- -GGUUa-CCgCC-CGGUGGG---UGGAGUg---GG- -5'
3584 5' -59.5 NC_001650.1 + 127953 0.66 0.813445
Target:  5'- aCCAA-GGUgaacaGGuGCCuGCCCGCCaucuaCACCCa -3'
miRNA:   3'- -GGUUaCCG-----CC-CGG-UGGGUGGa----GUGGG- -5'
3584 5' -59.5 NC_001650.1 + 144246 0.66 0.813445
Target:  5'- gCCAucuUGGCGuuGCC-CCC-CCUC-CCCu -3'
miRNA:   3'- -GGUu--ACCGCc-CGGuGGGuGGAGuGGG- -5'
3584 5' -59.5 NC_001650.1 + 130167 0.66 0.813445
Target:  5'- gCCAcgGGCgccuccagGGGCgUGCCCGCCaCAgCCu -3'
miRNA:   3'- -GGUuaCCG--------CCCG-GUGGGUGGaGUgGG- -5'
3584 5' -59.5 NC_001650.1 + 44803 0.66 0.805036
Target:  5'- uCC-GUGGUGGG-CACCCAgCagACCUu -3'
miRNA:   3'- -GGuUACCGCCCgGUGGGUgGagUGGG- -5'
3584 5' -59.5 NC_001650.1 + 127759 0.66 0.805036
Target:  5'- -gGGUGGUcacGGGCCcgGCCCACC-CcUCCa -3'
miRNA:   3'- ggUUACCG---CCCGG--UGGGUGGaGuGGG- -5'
3584 5' -59.5 NC_001650.1 + 6385 0.66 0.805036
Target:  5'- cCCAAUGGgagcuaagGGGCacuGCCCACUcaACCCc -3'
miRNA:   3'- -GGUUACCg-------CCCGg--UGGGUGGagUGGG- -5'
3584 5' -59.5 NC_001650.1 + 147876 0.66 0.805036
Target:  5'- cCCAGagcGGCucccGGCCGcgcuuCCCACCggcUCACCCc -3'
miRNA:   3'- -GGUUa--CCGc---CCGGU-----GGGUGG---AGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 177275 0.66 0.805036
Target:  5'- -uGcgGGUGGGCC-CCUcuuuGCCUuCACCa -3'
miRNA:   3'- ggUuaCCGCCCGGuGGG----UGGA-GUGGg -5'
3584 5' -59.5 NC_001650.1 + 6549 0.66 0.805036
Target:  5'- cCCAAUGGgagcuaagGGGCacuGCCCACUcaACCCc -3'
miRNA:   3'- -GGUUACCg-------CCCGg--UGGGUGGagUGGG- -5'
3584 5' -59.5 NC_001650.1 + 10568 0.66 0.805036
Target:  5'- -uGcgGGUGGGCC-CCUcuuuGCCUuCACCa -3'
miRNA:   3'- ggUuaCCGCCCGGuGGG----UGGA-GUGGg -5'
3584 5' -59.5 NC_001650.1 + 173092 0.66 0.805036
Target:  5'- cCCAAUGGgagcuaagGGGCacuGCCCACUcaACCCc -3'
miRNA:   3'- -GGUUACCg-------CCCGg--UGGGUGGagUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.