miRNA display CGI


Results 21 - 40 of 312 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3584 5' -59.5 NC_001650.1 + 109969 0.66 0.837742
Target:  5'- aCCuugGGCcaGGCCACCUcggUCACCCa -3'
miRNA:   3'- -GGuuaCCGc-CCGGUGGGuggAGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 89821 0.66 0.837742
Target:  5'- aCCGGgugcUGGUGGGUaagaGCuCCgACCUCucguGCCCg -3'
miRNA:   3'- -GGUU----ACCGCCCGg---UG-GG-UGGAG----UGGG- -5'
3584 5' -59.5 NC_001650.1 + 56852 0.66 0.837742
Target:  5'- gCGcgGGgGGGUCAgCUaggagGCCUCuuACCCg -3'
miRNA:   3'- gGUuaCCgCCCGGUgGG-----UGGAG--UGGG- -5'
3584 5' -59.5 NC_001650.1 + 22513 0.66 0.833
Target:  5'- cUCGA-GGCcccacagcuucaccgGGGCCACCCGCgccuccaucauCUCcCCCa -3'
miRNA:   3'- -GGUUaCCG---------------CCCGGUGGGUG-----------GAGuGGG- -5'
3584 5' -59.5 NC_001650.1 + 52524 0.66 0.829805
Target:  5'- uCCAGUauacaGGGCCGCCggugGCCUCuuCCCa -3'
miRNA:   3'- -GGUUAccg--CCCGGUGGg---UGGAGu-GGG- -5'
3584 5' -59.5 NC_001650.1 + 8139 0.66 0.829805
Target:  5'- cCCAAUGGgGGauguCCACUagccCCUCuGCCCa -3'
miRNA:   3'- -GGUUACCgCCc---GGUGGgu--GGAG-UGGG- -5'
3584 5' -59.5 NC_001650.1 + 147918 0.66 0.829805
Target:  5'- cCCAGUaGCGGuGCC-CCgaaaCUCACCCc -3'
miRNA:   3'- -GGUUAcCGCC-CGGuGGgug-GAGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 70500 0.66 0.829805
Target:  5'- ---uUGGUGGGCCugC-GCCcgUCGCCa -3'
miRNA:   3'- gguuACCGCCCGGugGgUGG--AGUGGg -5'
3584 5' -59.5 NC_001650.1 + 174846 0.66 0.829805
Target:  5'- cCCAAUGGgGGauguCCACUagccCCUCuGCCCa -3'
miRNA:   3'- -GGUUACCgCCc---GGUGGgu--GGAG-UGGG- -5'
3584 5' -59.5 NC_001650.1 + 79245 0.66 0.829805
Target:  5'- uCCAGagGGCucucccggGaGGCCuCCCcgucuCCUCGCCCg -3'
miRNA:   3'- -GGUUa-CCG--------C-CCGGuGGGu----GGAGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 37792 0.66 0.829805
Target:  5'- ----aGGCGcucGGCCGCcgcccgcaCCGCCUCGuCCCc -3'
miRNA:   3'- gguuaCCGC---CCGGUG--------GGUGGAGU-GGG- -5'
3584 5' -59.5 NC_001650.1 + 181921 0.66 0.829805
Target:  5'- gCCGca-GCGGGCUcCCCcCUUCACCg -3'
miRNA:   3'- -GGUuacCGCCCGGuGGGuGGAGUGGg -5'
3584 5' -59.5 NC_001650.1 + 15214 0.66 0.829805
Target:  5'- gCCGca-GCGGGCUcCCCcCUUCACCg -3'
miRNA:   3'- -GGUuacCGCCCGGuGGGuGGAGUGGg -5'
3584 5' -59.5 NC_001650.1 + 145749 0.66 0.829805
Target:  5'- gCC-AUGGCGGGCaggUCCGCCggguUCCa -3'
miRNA:   3'- -GGuUACCGCCCGgu-GGGUGGagu-GGG- -5'
3584 5' -59.5 NC_001650.1 + 93438 0.66 0.829805
Target:  5'- aCGA-GGCGGG-UACCCuguCCUCGCa- -3'
miRNA:   3'- gGUUaCCGCCCgGUGGGu--GGAGUGgg -5'
3584 5' -59.5 NC_001650.1 + 49823 0.66 0.829805
Target:  5'- uCCGGUGGUGuGGaaACCCAUgaCGuCCCu -3'
miRNA:   3'- -GGUUACCGC-CCggUGGGUGgaGU-GGG- -5'
3584 5' -59.5 NC_001650.1 + 60632 0.66 0.829805
Target:  5'- gCCGGUugaGGgGGGCCACCguCUccagCugCCu -3'
miRNA:   3'- -GGUUA---CCgCCCGGUGGguGGa---GugGG- -5'
3584 5' -59.5 NC_001650.1 + 117781 0.66 0.829805
Target:  5'- gCCAAgcuggGGagGGGCUACauggaCGCCgagagCGCCCu -3'
miRNA:   3'- -GGUUa----CCg-CCCGGUGg----GUGGa----GUGGG- -5'
3584 5' -59.5 NC_001650.1 + 131338 0.66 0.829805
Target:  5'- cCCGcgGGUGGGgC-CCgGCCggggGCCCu -3'
miRNA:   3'- -GGUuaCCGCCCgGuGGgUGGag--UGGG- -5'
3584 5' -59.5 NC_001650.1 + 71856 0.66 0.829805
Target:  5'- -gGGUGGCccuguaGGCCACaCC-CCUggCGCCCg -3'
miRNA:   3'- ggUUACCGc-----CCGGUG-GGuGGA--GUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.