miRNA display CGI


Results 21 - 40 of 312 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3584 5' -59.5 NC_001650.1 + 7819 1.12 0.001206
Target:  5'- cCCAAUGGCGGGCCACCCACCUCACCCc -3'
miRNA:   3'- -GGUUACCGCCCGGUGGGUGGAGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 8047 0.68 0.723831
Target:  5'- ----cGGuCGGGCCAUgCACCcagUgGCCCa -3'
miRNA:   3'- gguuaCC-GCCCGGUGgGUGG---AgUGGG- -5'
3584 5' -59.5 NC_001650.1 + 8139 0.66 0.829805
Target:  5'- cCCAAUGGgGGauguCCACUagccCCUCuGCCCa -3'
miRNA:   3'- -GGUUACCgCCc---GGUGGgu--GGAG-UGGG- -5'
3584 5' -59.5 NC_001650.1 + 8256 0.69 0.685514
Target:  5'- gCCAAUGGgGGGCCugUgGguauuaCUCaauGCCCa -3'
miRNA:   3'- -GGUUACCgCCCGGugGgUg-----GAG---UGGG- -5'
3584 5' -59.5 NC_001650.1 + 8352 0.66 0.837742
Target:  5'- cCCGggGGUGaauGCCACCCcCCaCACUCa -3'
miRNA:   3'- -GGUuaCCGCc--CGGUGGGuGGaGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 10568 0.66 0.805036
Target:  5'- -uGcgGGUGGGCC-CCUcuuuGCCUuCACCa -3'
miRNA:   3'- ggUuaCCGCCCGGuGGG----UGGA-GUGGg -5'
3584 5' -59.5 NC_001650.1 + 11430 0.67 0.787795
Target:  5'- -----cGCGcGCCACCCAgCC-CACCCa -3'
miRNA:   3'- gguuacCGCcCGGUGGGU-GGaGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 13285 0.72 0.474914
Target:  5'- -aGGUGGUGGaGCCACagagagaCACC-CACCCu -3'
miRNA:   3'- ggUUACCGCC-CGGUGg------GUGGaGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 13465 0.69 0.685514
Target:  5'- cCCAcUGGcCGGGUacaucauggagaCGCCCccugACCuUCACCCa -3'
miRNA:   3'- -GGUuACC-GCCCG------------GUGGG----UGG-AGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 14649 0.75 0.358429
Target:  5'- aCAGUGGaaccCGGGCgGCCgGCCUCucuCCCc -3'
miRNA:   3'- gGUUACC----GCCCGgUGGgUGGAGu--GGG- -5'
3584 5' -59.5 NC_001650.1 + 14842 0.68 0.692281
Target:  5'- ----cGGCGGggauuuccugugcaGCCGgCCGCCUC-CCCg -3'
miRNA:   3'- gguuaCCGCC--------------CGGUgGGUGGAGuGGG- -5'
3584 5' -59.5 NC_001650.1 + 15063 0.68 0.73325
Target:  5'- gCCGcUGGgGGGgaagggacggccCCGCCCGCUUCcucuuuacagACCCg -3'
miRNA:   3'- -GGUuACCgCCC------------GGUGGGUGGAG----------UGGG- -5'
3584 5' -59.5 NC_001650.1 + 15214 0.66 0.829805
Target:  5'- gCCGca-GCGGGCUcCCCcCUUCACCg -3'
miRNA:   3'- -GGUuacCGCCCGGuGGGuGGAGUGGg -5'
3584 5' -59.5 NC_001650.1 + 15643 0.71 0.530324
Target:  5'- ---uUGGUGuaGUCACCCACCUC-CCCa -3'
miRNA:   3'- gguuACCGCc-CGGUGGGUGGAGuGGG- -5'
3584 5' -59.5 NC_001650.1 + 15845 0.72 0.483957
Target:  5'- ----aGGuUGuGGCCACCCACC-CACCUa -3'
miRNA:   3'- gguuaCC-GC-CCGGUGGGUGGaGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 16281 0.67 0.787795
Target:  5'- cCCAuUGGgguuaGGGuCCACCCACUaaaauggcUgACCCu -3'
miRNA:   3'- -GGUuACCg----CCC-GGUGGGUGG--------AgUGGG- -5'
3584 5' -59.5 NC_001650.1 + 16473 0.67 0.77363
Target:  5'- cCCAAUgGGCGGGCCacaugaggucaguggGCaggCCACCUcCAUgCa -3'
miRNA:   3'- -GGUUA-CCGCCCGG---------------UG---GGUGGA-GUGgG- -5'
3584 5' -59.5 NC_001650.1 + 16513 0.67 0.799921
Target:  5'- aCCAagAUGGCcaccccaccaagauGGCCACCCcACCaagauggcCACCCa -3'
miRNA:   3'- -GGU--UACCGc-------------CCGGUGGG-UGGa-------GUGGG- -5'
3584 5' -59.5 NC_001650.1 + 16725 0.67 0.749073
Target:  5'- aCCAagAUGGCagcuccaauauGGCCACCCACCaacauggcugacucUCACUg -3'
miRNA:   3'- -GGU--UACCGc----------CCGGUGGGUGG--------------AGUGGg -5'
3584 5' -59.5 NC_001650.1 + 16837 0.69 0.646549
Target:  5'- aCCAagAUGGCagcuccaauauGGCCACCCACCaauauggcUgACCCu -3'
miRNA:   3'- -GGU--UACCGc----------CCGGUGGGUGG--------AgUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.