miRNA display CGI


Results 1 - 20 of 312 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3584 5' -59.5 NC_001650.1 + 604 0.67 0.778979
Target:  5'- gCGA-GGcCGGGCUGCCgC-CCUCcCCCg -3'
miRNA:   3'- gGUUaCC-GCCCGGUGG-GuGGAGuGGG- -5'
3584 5' -59.5 NC_001650.1 + 826 0.82 0.126681
Target:  5'- aCCAAUGG-GGGCCcgggggagggcggcaGCCgGCCUCGCCCc -3'
miRNA:   3'- -GGUUACCgCCCGG---------------UGGgUGGAGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 1273 0.69 0.685514
Target:  5'- cCCGggGGUGGGCCcaaCCGCUUUACa- -3'
miRNA:   3'- -GGUuaCCGCCCGGug-GGUGGAGUGgg -5'
3584 5' -59.5 NC_001650.1 + 1711 0.67 0.751839
Target:  5'- cCCugccUGGCaa-CCGCCUACCUCAUCCc -3'
miRNA:   3'- -GGuu--ACCGcccGGUGGGUGGAGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 2859 0.66 0.837742
Target:  5'- aCCu---GCcuGGCaacaGCCUACCUCACCCc -3'
miRNA:   3'- -GGuuacCGc-CCGg---UGGGUGGAGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 3376 0.68 0.71434
Target:  5'- gCCAcguggGGCGGGgCGgCCAUCUUaggACCCc -3'
miRNA:   3'- -GGUua---CCGCCCgGUgGGUGGAG---UGGG- -5'
3584 5' -59.5 NC_001650.1 + 5619 0.67 0.786919
Target:  5'- cCCAuUGGUcacaggguagaguGGGCgGCCC-CCUUagACCCc -3'
miRNA:   3'- -GGUuACCG-------------CCCGgUGGGuGGAG--UGGG- -5'
3584 5' -59.5 NC_001650.1 + 5847 0.77 0.263461
Target:  5'- nCCGggGGUcuaaggGGGCCGCCCACUcUACCCu -3'
miRNA:   3'- -GGUuaCCG------CCCGGUGGGUGGaGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 5871 0.82 0.131811
Target:  5'- gCCAAUGG-GGGCUACCCACUaaGCCCc -3'
miRNA:   3'- -GGUUACCgCCCGGUGGGUGGagUGGG- -5'
3584 5' -59.5 NC_001650.1 + 6039 0.76 0.281943
Target:  5'- cCCAAUGG-GGGCCuagggggccuGCCCACUcUACCCu -3'
miRNA:   3'- -GGUUACCgCCCGG----------UGGGUGGaGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 6162 0.66 0.845507
Target:  5'- cCCAAUGGgagcuaaggGGGaCUGCCCACUcaACCCc -3'
miRNA:   3'- -GGUUACCg--------CCC-GGUGGGUGGagUGGG- -5'
3584 5' -59.5 NC_001650.1 + 6385 0.66 0.805036
Target:  5'- cCCAAUGGgagcuaagGGGCacuGCCCACUcaACCCc -3'
miRNA:   3'- -GGUUACCg-------CCCGg--UGGGUGGagUGGG- -5'
3584 5' -59.5 NC_001650.1 + 6549 0.66 0.805036
Target:  5'- cCCAAUGGgagcuaagGGGCacuGCCCACUcaACCCc -3'
miRNA:   3'- -GGUUACCg-------CCCGg--UGGGUGGagUGGG- -5'
3584 5' -59.5 NC_001650.1 + 6660 0.8 0.17677
Target:  5'- cCCAAUGG-GGGCUGCCCAuauccCCUCuGCCCa -3'
miRNA:   3'- -GGUUACCgCCCGGUGGGU-----GGAG-UGGG- -5'
3584 5' -59.5 NC_001650.1 + 6782 0.69 0.666082
Target:  5'- cCCAAUGG-GGGCUuagggguacuGCCCACUcUACuCCa -3'
miRNA:   3'- -GGUUACCgCCCGG----------UGGGUGGaGUG-GG- -5'
3584 5' -59.5 NC_001650.1 + 7250 0.69 0.656324
Target:  5'- cCCAAUGG-GGGCUGUCCACUaUCuCCCa -3'
miRNA:   3'- -GGUUACCgCCCGGUGGGUGG-AGuGGG- -5'
3584 5' -59.5 NC_001650.1 + 7473 0.87 0.063245
Target:  5'- cCCAAUGG-GGGCUACCCACUgCACCCu -3'
miRNA:   3'- -GGUUACCgCCCGGUGGGUGGaGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 7596 0.73 0.422549
Target:  5'- cCCAAUGG-GGGCUGuCCCACCcCACUUu -3'
miRNA:   3'- -GGUUACCgCCCGGU-GGGUGGaGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 7708 0.81 0.156577
Target:  5'- cCCAAUGG-GGGCUACCCACUaucucccaCACCCa -3'
miRNA:   3'- -GGUUACCgCCCGGUGGGUGGa-------GUGGG- -5'
3584 5' -59.5 NC_001650.1 + 7780 0.67 0.796484
Target:  5'- cCCGAUGcauaugcaGUGaGuCCACCCACCUUagucuGCCCa -3'
miRNA:   3'- -GGUUAC--------CGCcC-GGUGGGUGGAG-----UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.