miRNA display CGI


Results 1 - 20 of 312 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3584 5' -59.5 NC_001650.1 + 23395 0.72 0.474914
Target:  5'- cCCuc-GGCGGGCCcCCCuuCCUCgauggaGCCCu -3'
miRNA:   3'- -GGuuaCCGCCCGGuGGGu-GGAG------UGGG- -5'
3584 5' -59.5 NC_001650.1 + 83374 0.74 0.381662
Target:  5'- aCCgAGUGGCGGGCCgagGCCCuGCCgucggUACCa -3'
miRNA:   3'- -GG-UUACCGCCCGG---UGGG-UGGa----GUGGg -5'
3584 5' -59.5 NC_001650.1 + 58659 0.74 0.397699
Target:  5'- -aGGUGGUGGuCCGCCCugguCCUCGCCa -3'
miRNA:   3'- ggUUACCGCCcGGUGGGu---GGAGUGGg -5'
3584 5' -59.5 NC_001650.1 + 70939 0.74 0.397699
Target:  5'- gCUAcgGGCGGGCCAUggUCGCCUUcgACCa -3'
miRNA:   3'- -GGUuaCCGCCCGGUG--GGUGGAG--UGGg -5'
3584 5' -59.5 NC_001650.1 + 130084 0.73 0.422549
Target:  5'- gCCGGggagGGgGGagaGCCGCCCGCCaaGCCCa -3'
miRNA:   3'- -GGUUa---CCgCC---CGGUGGGUGGagUGGG- -5'
3584 5' -59.5 NC_001650.1 + 136367 0.73 0.422549
Target:  5'- gCgGGUGauGUGGGCCACCCACUcugggCACCUc -3'
miRNA:   3'- -GgUUAC--CGCCCGGUGGGUGGa----GUGGG- -5'
3584 5' -59.5 NC_001650.1 + 134889 0.73 0.447436
Target:  5'- cCCGAgaGGCGgucaGGUCGCCCAggugcuucuuccuCCUCACCCc -3'
miRNA:   3'- -GGUUa-CCGC----CCGGUGGGU-------------GGAGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 121307 0.72 0.465956
Target:  5'- cCCGAgauagagGGCGugcgcGCCGCCUuccacgcgugcgGCCUCACCCg -3'
miRNA:   3'- -GGUUa------CCGCc----CGGUGGG------------UGGAGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 13285 0.72 0.474914
Target:  5'- -aGGUGGUGGaGCCACagagagaCACC-CACCCu -3'
miRNA:   3'- ggUUACCGCC-CGGUGg------GUGGaGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 109275 0.74 0.373807
Target:  5'- aUAGUGGgGGGCgC-CCCGCUcgUCGCCCu -3'
miRNA:   3'- gGUUACCgCCCG-GuGGGUGG--AGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 131918 0.74 0.373807
Target:  5'- gCCAG-GGCGGGCUuccugcuguggGCCCugCUCACg- -3'
miRNA:   3'- -GGUUaCCGCCCGG-----------UGGGugGAGUGgg -5'
3584 5' -59.5 NC_001650.1 + 56379 0.74 0.366062
Target:  5'- cCCAcgGGCgaaccGGGCCGCCCucgcuCUUC-CCCg -3'
miRNA:   3'- -GGUuaCCG-----CCCGGUGGGu----GGAGuGGG- -5'
3584 5' -59.5 NC_001650.1 + 131641 0.77 0.27567
Target:  5'- cCCGAgcUGGC-GGCCGCCUGCCUgcgCGCCCc -3'
miRNA:   3'- -GGUU--ACCGcCCGGUGGGUGGA---GUGGG- -5'
3584 5' -59.5 NC_001650.1 + 42508 0.76 0.288328
Target:  5'- cCCAGUguguuugggcaGGUGGGCCACCgGCg-CGCCCg -3'
miRNA:   3'- -GGUUA-----------CCGCCCGGUGGgUGgaGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 164569 0.76 0.301437
Target:  5'- cCCAAccGGcCGGGCCcCCuCGCCUCACUCc -3'
miRNA:   3'- -GGUUa-CC-GCCCGGuGG-GUGGAGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 129949 0.75 0.329023
Target:  5'- gCuGUGGCGGGCaCGCCC-CUggaggCGCCCg -3'
miRNA:   3'- gGuUACCGCCCG-GUGGGuGGa----GUGGG- -5'
3584 5' -59.5 NC_001650.1 + 27220 0.75 0.329023
Target:  5'- aCAGgggGGCGGGCgACUgcaGCCUCACCa -3'
miRNA:   3'- gGUUa--CCGCCCGgUGGg--UGGAGUGGg -5'
3584 5' -59.5 NC_001650.1 + 14649 0.75 0.358429
Target:  5'- aCAGUGGaaccCGGGCgGCCgGCCUCucuCCCc -3'
miRNA:   3'- gGUUACC----GCCCGgUGGgUGGAGu--GGG- -5'
3584 5' -59.5 NC_001650.1 + 181356 0.75 0.358429
Target:  5'- aCAGUGGaaccCGGGCgGCCgGCCUCucuCCCc -3'
miRNA:   3'- gGUUACC----GCCCGgUGGgUGGAGu--GGG- -5'
3584 5' -59.5 NC_001650.1 + 27538 0.74 0.366062
Target:  5'- gCCAcgGGCuGGCCugCCugGCCgagccCACCCa -3'
miRNA:   3'- -GGUuaCCGcCCGGugGG--UGGa----GUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.