miRNA display CGI


Results 1 - 20 of 312 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3584 5' -59.5 NC_001650.1 + 7819 1.12 0.001206
Target:  5'- cCCAAUGGCGGGCCACCCACCUCACCCc -3'
miRNA:   3'- -GGUUACCGCCCGGUGGGUGGAGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 174526 1.12 0.001206
Target:  5'- cCCAAUGGCGGGCCACCCACCUCACCCc -3'
miRNA:   3'- -GGUUACCGCCCGGUGGGUGGAGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 174180 0.87 0.063245
Target:  5'- cCCAAUGG-GGGCUACCCACUgCACCCu -3'
miRNA:   3'- -GGUUACCgCCCGGUGGGUGGaGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 7473 0.87 0.063245
Target:  5'- cCCAAUGG-GGGCUACCCACUgCACCCu -3'
miRNA:   3'- -GGUUACCgCCCGGUGGGUGGaGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 131833 0.83 0.116388
Target:  5'- gCGGUGGCcGGCCGCCgACgUCACCCa -3'
miRNA:   3'- gGUUACCGcCCGGUGGgUGgAGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 826 0.82 0.126681
Target:  5'- aCCAAUGG-GGGCCcgggggagggcggcaGCCgGCCUCGCCCc -3'
miRNA:   3'- -GGUUACCgCCCGG---------------UGGgUGGAGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 167533 0.82 0.129865
Target:  5'- aCCAAUGG-GGGCCcgggggagggcggcaGCCCgGCCUCGCCCc -3'
miRNA:   3'- -GGUUACCgCCCGG---------------UGGG-UGGAGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 172578 0.82 0.131811
Target:  5'- gCCAAUGG-GGGCUACCCACUaaGCCCc -3'
miRNA:   3'- -GGUUACCgCCCGGUGGGUGGagUGGG- -5'
3584 5' -59.5 NC_001650.1 + 5871 0.82 0.131811
Target:  5'- gCCAAUGG-GGGCUACCCACUaaGCCCc -3'
miRNA:   3'- -GGUUACCgCCCGGUGGGUGGagUGGG- -5'
3584 5' -59.5 NC_001650.1 + 157039 0.81 0.141949
Target:  5'- uCCAAUGGCGGGgCugCUGCCagaCGCCCg -3'
miRNA:   3'- -GGUUACCGCCCgGugGGUGGa--GUGGG- -5'
3584 5' -59.5 NC_001650.1 + 7708 0.81 0.156577
Target:  5'- cCCAAUGG-GGGCUACCCACUaucucccaCACCCa -3'
miRNA:   3'- -GGUUACCgCCCGGUGGGUGGa-------GUGGG- -5'
3584 5' -59.5 NC_001650.1 + 174415 0.81 0.156577
Target:  5'- cCCAAUGG-GGGCUACCCACUaucucccaCACCCa -3'
miRNA:   3'- -GGUUACCgCCCGGUGGGUGGa-------GUGGG- -5'
3584 5' -59.5 NC_001650.1 + 6660 0.8 0.17677
Target:  5'- cCCAAUGG-GGGCUGCCCAuauccCCUCuGCCCa -3'
miRNA:   3'- -GGUUACCgCCCGGUGGGU-----GGAG-UGGG- -5'
3584 5' -59.5 NC_001650.1 + 173367 0.8 0.17677
Target:  5'- cCCAAUGG-GGGCUGCCCAuauccCCUCuGCCCa -3'
miRNA:   3'- -GGUUACCgCCCGGUGGGU-----GGAG-UGGG- -5'
3584 5' -59.5 NC_001650.1 + 31138 0.8 0.17677
Target:  5'- gCGcgGGCGGuGCCACCgACCcCGCCCc -3'
miRNA:   3'- gGUuaCCGCC-CGGUGGgUGGaGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 5847 0.77 0.263461
Target:  5'- nCCGggGGUcuaaggGGGCCGCCCACUcUACCCu -3'
miRNA:   3'- -GGUuaCCG------CCCGGUGGGUGGaGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 172554 0.77 0.263461
Target:  5'- nCCGggGGUcuaaggGGGCCGCCCACUcUACCCu -3'
miRNA:   3'- -GGUuaCCG------CCCGGUGGGUGGaGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 131641 0.77 0.27567
Target:  5'- cCCGAgcUGGC-GGCCGCCUGCCUgcgCGCCCc -3'
miRNA:   3'- -GGUU--ACCGcCCGGUGGGUGGA---GUGGG- -5'
3584 5' -59.5 NC_001650.1 + 89702 0.76 0.28131
Target:  5'- gUCGAUGGCGGcCCAcgcgaacCCCGCCUCggcgGCCCa -3'
miRNA:   3'- -GGUUACCGCCcGGU-------GGGUGGAG----UGGG- -5'
3584 5' -59.5 NC_001650.1 + 172746 0.76 0.281943
Target:  5'- cCCAAUGG-GGGCCuagggggccuGCCCACUcUACCCu -3'
miRNA:   3'- -GGUUACCgCCCGG----------UGGGUGGaGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.