miRNA display CGI


Results 1 - 20 of 312 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3584 5' -59.5 NC_001650.1 + 184104 0.67 0.760082
Target:  5'- gCCAucuUGGUGGGCgACC-ACCUCgggggugGCCa -3'
miRNA:   3'- -GGUu--ACCGCCCGgUGGgUGGAG-------UGGg -5'
3584 5' -59.5 NC_001650.1 + 183876 0.68 0.703826
Target:  5'- cCCAcUGaGauGGCCACCC-CCgagguggUCGCCCa -3'
miRNA:   3'- -GGUuAC-CgcCCGGUGGGuGG-------AGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 183696 0.69 0.646549
Target:  5'- aCCAaaAUGGCagcuccaauauGGCCACCCACCaauauggcUgACCCu -3'
miRNA:   3'- -GGU--UACCGc----------CCGGUGGGUGG--------AgUGGG- -5'
3584 5' -59.5 NC_001650.1 + 183544 0.69 0.646549
Target:  5'- aCCAagAUGGCagcuccaauauGGCCACCCACCaauauggcUgACCCu -3'
miRNA:   3'- -GGU--UACCGc----------CCGGUGGGUGG--------AgUGGG- -5'
3584 5' -59.5 NC_001650.1 + 183432 0.67 0.749073
Target:  5'- aCCAagAUGGCagcuccaauauGGCCACCCACCaacauggcugacucUCACUg -3'
miRNA:   3'- -GGU--UACCGc----------CCGGUGGGUGG--------------AGUGGg -5'
3584 5' -59.5 NC_001650.1 + 183220 0.67 0.799921
Target:  5'- aCCAagAUGGCcaccccaccaagauGGCCACCCcACCaagauggcCACCCa -3'
miRNA:   3'- -GGU--UACCGc-------------CCGGUGGG-UGGa-------GUGGG- -5'
3584 5' -59.5 NC_001650.1 + 183180 0.67 0.77363
Target:  5'- cCCAAUgGGCGGGCCacaugaggucaguggGCaggCCACCUcCAUgCa -3'
miRNA:   3'- -GGUUA-CCGCCCGG---------------UG---GGUGGA-GUGgG- -5'
3584 5' -59.5 NC_001650.1 + 182988 0.67 0.787795
Target:  5'- cCCAuUGGgguuaGGGuCCACCCACUaaaauggcUgACCCu -3'
miRNA:   3'- -GGUuACCg----CCC-GGUGGGUGG--------AgUGGG- -5'
3584 5' -59.5 NC_001650.1 + 182552 0.72 0.483957
Target:  5'- ----aGGuUGuGGCCACCCACC-CACCUa -3'
miRNA:   3'- gguuaCC-GC-CCGGUGGGUGGaGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 182350 0.71 0.530324
Target:  5'- ---uUGGUGuaGUCACCCACCUC-CCCa -3'
miRNA:   3'- gguuACCGCc-CGGUGGGUGGAGuGGG- -5'
3584 5' -59.5 NC_001650.1 + 181921 0.66 0.829805
Target:  5'- gCCGca-GCGGGCUcCCCcCUUCACCg -3'
miRNA:   3'- -GGUuacCGCCCGGuGGGuGGAGUGGg -5'
3584 5' -59.5 NC_001650.1 + 181770 0.68 0.73325
Target:  5'- gCCGcUGGgGGGgaagggacggccCCGCCCGCUUCcucuuuacagACCCg -3'
miRNA:   3'- -GGUuACCgCCC------------GGUGGGUGGAG----------UGGG- -5'
3584 5' -59.5 NC_001650.1 + 181549 0.68 0.692281
Target:  5'- ----cGGCGGggauuuccugugcaGCCGgCCGCCUC-CCCg -3'
miRNA:   3'- gguuaCCGCC--------------CGGUgGGUGGAGuGGG- -5'
3584 5' -59.5 NC_001650.1 + 181356 0.75 0.358429
Target:  5'- aCAGUGGaaccCGGGCgGCCgGCCUCucuCCCc -3'
miRNA:   3'- gGUUACC----GCCCGgUGGgUGGAGu--GGG- -5'
3584 5' -59.5 NC_001650.1 + 180172 0.69 0.685514
Target:  5'- cCCAcUGGcCGGGUacaucauggagaCGCCCccugACCuUCACCCa -3'
miRNA:   3'- -GGUuACC-GCCCG------------GUGGG----UGG-AGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 179992 0.72 0.474914
Target:  5'- -aGGUGGUGGaGCCACagagagaCACC-CACCCu -3'
miRNA:   3'- ggUUACCGCC-CGGUGg------GUGGaGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 178137 0.67 0.787795
Target:  5'- -----cGCGcGCCACCCAgCC-CACCCa -3'
miRNA:   3'- gguuacCGCcCGGUGGGU-GGaGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 177275 0.66 0.805036
Target:  5'- -uGcgGGUGGGCC-CCUcuuuGCCUuCACCa -3'
miRNA:   3'- ggUuaCCGCCCGGuGGG----UGGA-GUGGg -5'
3584 5' -59.5 NC_001650.1 + 175059 0.66 0.837742
Target:  5'- cCCGggGGUGaauGCCACCCcCCaCACUCa -3'
miRNA:   3'- -GGUuaCCGCc--CGGUGGGuGGaGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 174963 0.69 0.685514
Target:  5'- gCCAAUGGgGGGCCugUgGguauuaCUCaauGCCCa -3'
miRNA:   3'- -GGUUACCgCCCGGugGgUg-----GAG---UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.