miRNA display CGI


Results 21 - 40 of 312 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3584 5' -59.5 NC_001650.1 + 177275 0.66 0.805036
Target:  5'- -uGcgGGUGGGCC-CCUcuuuGCCUuCACCa -3'
miRNA:   3'- ggUuaCCGCCCGGuGGG----UGGA-GUGGg -5'
3584 5' -59.5 NC_001650.1 + 23800 0.66 0.821704
Target:  5'- uCCuuuGUGGCcucGGCC-UUCGCCUaCACCCc -3'
miRNA:   3'- -GGu--UACCGc--CCGGuGGGUGGA-GUGGG- -5'
3584 5' -59.5 NC_001650.1 + 173256 0.66 0.805036
Target:  5'- cCCAAUGGgagcuaagGGGCacuGCCCACUcaACCCc -3'
miRNA:   3'- -GGUUACCg-------CCCGg--UGGGUGGagUGGG- -5'
3584 5' -59.5 NC_001650.1 + 60632 0.66 0.829805
Target:  5'- gCCGGUugaGGgGGGCCACCguCUccagCugCCu -3'
miRNA:   3'- -GGUUA---CCgCCCGGUGGguGGa---GugGG- -5'
3584 5' -59.5 NC_001650.1 + 89821 0.66 0.837742
Target:  5'- aCCGGgugcUGGUGGGUaagaGCuCCgACCUCucguGCCCg -3'
miRNA:   3'- -GGUU----ACCGCCCGg---UG-GG-UGGAG----UGGG- -5'
3584 5' -59.5 NC_001650.1 + 28289 0.66 0.845507
Target:  5'- cCCuauguuGUGGaUGGcGUCGCCCAcguCCUC-CCCg -3'
miRNA:   3'- -GGu-----UACC-GCC-CGGUGGGU---GGAGuGGG- -5'
3584 5' -59.5 NC_001650.1 + 48489 0.66 0.829002
Target:  5'- aCCAGcuUGGCccugugggcuaggGGGCUAgCCGCCUggaagcaGCCCc -3'
miRNA:   3'- -GGUU--ACCG-------------CCCGGUgGGUGGAg------UGGG- -5'
3584 5' -59.5 NC_001650.1 + 93438 0.66 0.829805
Target:  5'- aCGA-GGCGGG-UACCCuguCCUCGCa- -3'
miRNA:   3'- gGUUaCCGCCCgGUGGGu--GGAGUGgg -5'
3584 5' -59.5 NC_001650.1 + 116084 0.66 0.845507
Target:  5'- aCAGcaGCGcGGCCGCCC-UCgugugCACCCa -3'
miRNA:   3'- gGUUacCGC-CCGGUGGGuGGa----GUGGG- -5'
3584 5' -59.5 NC_001650.1 + 8352 0.66 0.837742
Target:  5'- cCCGggGGUGaauGCCACCCcCCaCACUCa -3'
miRNA:   3'- -GGUuaCCGCc--CGGUGGGuGGaGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 169566 0.66 0.837742
Target:  5'- aCCu---GCcuGGCaacaGCCUACCUCACCCc -3'
miRNA:   3'- -GGuuacCGc-CCGg---UGGGUGGAGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 29858 0.66 0.821704
Target:  5'- cCCA--GG-GGGUCcUCCuCCUCGCCCa -3'
miRNA:   3'- -GGUuaCCgCCCGGuGGGuGGAGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 147876 0.66 0.805036
Target:  5'- cCCAGagcGGCucccGGCCGcgcuuCCCACCggcUCACCCc -3'
miRNA:   3'- -GGUUa--CCGc---CCGGU-----GGGUGG---AGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 173092 0.66 0.805036
Target:  5'- cCCAAUGGgagcuaagGGGCacuGCCCACUcaACCCc -3'
miRNA:   3'- -GGUUACCg-------CCCGg--UGGGUGGagUGGG- -5'
3584 5' -59.5 NC_001650.1 + 175059 0.66 0.837742
Target:  5'- cCCGggGGUGaauGCCACCCcCCaCACUCa -3'
miRNA:   3'- -GGUuaCCGCc--CGGUGGGuGGaGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 60099 0.66 0.837742
Target:  5'- gCCGAgGGUcuGGCCcgACCCGCC--GCCCg -3'
miRNA:   3'- -GGUUaCCGc-CCGG--UGGGUGGagUGGG- -5'
3584 5' -59.5 NC_001650.1 + 50663 0.66 0.845507
Target:  5'- cCCGcgGG-GGGCCugaccuUCUACCUgcUGCCCg -3'
miRNA:   3'- -GGUuaCCgCCCGGu-----GGGUGGA--GUGGG- -5'
3584 5' -59.5 NC_001650.1 + 10568 0.66 0.805036
Target:  5'- -uGcgGGUGGGCC-CCUcuuuGCCUuCACCa -3'
miRNA:   3'- ggUuaCCGCCCGGuGGG----UGGA-GUGGg -5'
3584 5' -59.5 NC_001650.1 + 6385 0.66 0.805036
Target:  5'- cCCAAUGGgagcuaagGGGCacuGCCCACUcaACCCc -3'
miRNA:   3'- -GGUUACCg-------CCCGg--UGGGUGGagUGGG- -5'
3584 5' -59.5 NC_001650.1 + 181921 0.66 0.829805
Target:  5'- gCCGca-GCGGGCUcCCCcCUUCACCg -3'
miRNA:   3'- -GGUuacCGCCCGGuGGGuGGAGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.