Results 41 - 60 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3586 | 5' | -64.6 | NC_001650.1 | + | 121324 | 0.69 | 0.416253 |
Target: 5'- gCGCGCCGcCUUCCAcGCGuGCGgccucacCCGCGa -3' miRNA: 3'- -GCGCGGC-GAGGGUcCGU-CGCa------GGCGC- -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 90227 | 0.69 | 0.416253 |
Target: 5'- gGCGCgCGCUCCgGccgaccGGCGGCGaaCGCGc -3' miRNA: 3'- gCGCG-GCGAGGgU------CCGUCGCagGCGC- -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 56912 | 0.69 | 0.408164 |
Target: 5'- gGCGCC-CUCgaGcGGCAGCGggCCGCGa -3' miRNA: 3'- gCGCGGcGAGggU-CCGUCGCa-GGCGC- -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 134953 | 0.69 | 0.408164 |
Target: 5'- gGCGCCGcCUCCaCA-GCAGCaucugggggGUCCGCc -3' miRNA: 3'- gCGCGGC-GAGG-GUcCGUCG---------CAGGCGc -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 58556 | 0.69 | 0.400174 |
Target: 5'- gGUGUCGCcccccuuggcCCCGGGCagGGCGUCCGgGu -3' miRNA: 3'- gCGCGGCGa---------GGGUCCG--UCGCAGGCgC- -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 118236 | 0.69 | 0.384497 |
Target: 5'- aGCGCUcgggGUUCUCGGGCAGCuuggCCGCc -3' miRNA: 3'- gCGCGG----CGAGGGUCCGUCGca--GGCGc -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 164648 | 0.7 | 0.376812 |
Target: 5'- cCGCGCgGCaCCCGGGCucccgGGgGaCCGCGg -3' miRNA: 3'- -GCGCGgCGaGGGUCCG-----UCgCaGGCGC- -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 89476 | 0.7 | 0.361756 |
Target: 5'- uGCGCUggGCcgCCgAGGCGGgGUUCGCGu -3' miRNA: 3'- gCGCGG--CGa-GGgUCCGUCgCAGGCGC- -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 121082 | 0.7 | 0.361756 |
Target: 5'- gCGCGCCGCcCCCAGcGC--CG-CCGCGu -3' miRNA: 3'- -GCGCGGCGaGGGUC-CGucGCaGGCGC- -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 164610 | 0.7 | 0.354387 |
Target: 5'- cCGCGCCuGuCUCUCAGGCugGGCGaguUCUGCa -3' miRNA: 3'- -GCGCGG-C-GAGGGUCCG--UCGC---AGGCGc -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 181870 | 0.7 | 0.347124 |
Target: 5'- gGCGCCGCgCCaCGGGC-GCGg-CGCGg -3' miRNA: 3'- gCGCGGCGaGG-GUCCGuCGCagGCGC- -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 15163 | 0.7 | 0.347124 |
Target: 5'- gGCGCCGCgCCaCGGGC-GCGg-CGCGg -3' miRNA: 3'- gCGCGGCGaGG-GUCCGuCGCagGCGC- -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 72953 | 0.7 | 0.347124 |
Target: 5'- cCGCGaacCCGUUCaCCA-GCAGCGUCUGCc -3' miRNA: 3'- -GCGC---GGCGAG-GGUcCGUCGCAGGCGc -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 79831 | 0.7 | 0.339969 |
Target: 5'- aGCGCCuucugGCUCgCCugcuuGGCAGCGaCCGCc -3' miRNA: 3'- gCGCGG-----CGAG-GGu----CCGUCGCaGGCGc -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 102798 | 0.7 | 0.339969 |
Target: 5'- uCGCuGCUGCaUCUgGGGCgagGGCGUCUGCGc -3' miRNA: 3'- -GCG-CGGCG-AGGgUCCG---UCGCAGGCGC- -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 50476 | 0.71 | 0.31847 |
Target: 5'- cCGC-CCGCUCCCGGGCgcagagaGGCGccccugUCGCGc -3' miRNA: 3'- -GCGcGGCGAGGGUCCG-------UCGCa-----GGCGC- -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 134101 | 0.71 | 0.30319 |
Target: 5'- gGCGCCGCggUCCCAGGggcggccucuagaGGCGaCCGCu -3' miRNA: 3'- gCGCGGCG--AGGGUCCg------------UCGCaGGCGc -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 155932 | 0.71 | 0.295445 |
Target: 5'- cCGCGCUGCacgCCCuGGUcaacuccggcuucgaGGUGUCCGUGg -3' miRNA: 3'- -GCGCGGCGa--GGGuCCG---------------UCGCAGGCGC- -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 47759 | 0.71 | 0.292898 |
Target: 5'- cCGUGCCGC-CaCCAGGCGGCG-CCa-- -3' miRNA: 3'- -GCGCGGCGaG-GGUCCGUCGCaGGcgc -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 60118 | 0.72 | 0.286604 |
Target: 5'- -cCGCCGC-CCgCggAGGCcGCGUCCGCGg -3' miRNA: 3'- gcGCGGCGaGG-G--UCCGuCGCAGGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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