miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3586 5' -64.6 NC_001650.1 + 51065 0.67 0.547892
Target:  5'- uGCGCUGCgCCagcagaaaGGGCAGCucgCCGCc -3'
miRNA:   3'- gCGCGGCGaGGg-------UCCGUCGca-GGCGc -5'
3586 5' -64.6 NC_001650.1 + 130198 0.67 0.529408
Target:  5'- cCGCGCCGCcCUCA-GCAGCcucaggGcCCGCGc -3'
miRNA:   3'- -GCGCGGCGaGGGUcCGUCG------CaGGCGC- -5'
3586 5' -64.6 NC_001650.1 + 48257 0.67 0.529408
Target:  5'- gGgGCUGCUUCCAGGCGGCuagCCc-- -3'
miRNA:   3'- gCgCGGCGAGGGUCCGUCGca-GGcgc -5'
3586 5' -64.6 NC_001650.1 + 60806 0.67 0.529408
Target:  5'- aGUaGCCGUUCagCAGGCacAGCG-CCGCGu -3'
miRNA:   3'- gCG-CGGCGAGg-GUCCG--UCGCaGGCGC- -5'
3586 5' -64.6 NC_001650.1 + 57622 0.67 0.528489
Target:  5'- aGUGCCGUgcgcgCCCGGGCcgcagggGGUGggggagCCGCa -3'
miRNA:   3'- gCGCGGCGa----GGGUCCG-------UCGCa-----GGCGc -5'
3586 5' -64.6 NC_001650.1 + 29741 0.67 0.520251
Target:  5'- uCGCGCuagCGC-CCCAGGCGGC---CGCGc -3'
miRNA:   3'- -GCGCG---GCGaGGGUCCGUCGcagGCGC- -5'
3586 5' -64.6 NC_001650.1 + 59154 0.67 0.511157
Target:  5'- cCGcCGCCGcCUCCCGGGCcuc--CCGCGc -3'
miRNA:   3'- -GC-GCGGC-GAGGGUCCGucgcaGGCGC- -5'
3586 5' -64.6 NC_001650.1 + 164892 0.67 0.507538
Target:  5'- gCGCGCCGCcgccaccccacccCCCGGGCcccaccGCGgCCGCc -3'
miRNA:   3'- -GCGCGGCGa------------GGGUCCGu-----CGCaGGCGc -5'
3586 5' -64.6 NC_001650.1 + 30712 0.67 0.50213
Target:  5'- aCGCGCaggGCaCCgAGGaCAcguacGCGUCCGCGg -3'
miRNA:   3'- -GCGCGg--CGaGGgUCC-GU-----CGCAGGCGC- -5'
3586 5' -64.6 NC_001650.1 + 22694 0.67 0.50213
Target:  5'- gGgGCCcaUgCCGGGCGGCG-CCGCGc -3'
miRNA:   3'- gCgCGGcgAgGGUCCGUCGCaGGCGC- -5'
3586 5' -64.6 NC_001650.1 + 23891 0.68 0.48429
Target:  5'- uGC-CCGCcucCCCGGGCAagcacGCGUUCGCc -3'
miRNA:   3'- gCGcGGCGa--GGGUCCGU-----CGCAGGCGc -5'
3586 5' -64.6 NC_001650.1 + 24192 0.68 0.475484
Target:  5'- gCGCGCCaGCUugCCCAGGUAcGCc-CCGCu -3'
miRNA:   3'- -GCGCGG-CGA--GGGUCCGU-CGcaGGCGc -5'
3586 5' -64.6 NC_001650.1 + 69450 0.68 0.475484
Target:  5'- gCGcCGCCGCUcuacucgccCCCGGccucCAGCGcCCGCGc -3'
miRNA:   3'- -GC-GCGGCGA---------GGGUCc---GUCGCaGGCGC- -5'
3586 5' -64.6 NC_001650.1 + 182079 0.68 0.475484
Target:  5'- cCGCGCCGCgCCCGuGGC-GCGg-CGCc -3'
miRNA:   3'- -GCGCGGCGaGGGU-CCGuCGCagGCGc -5'
3586 5' -64.6 NC_001650.1 + 15372 0.68 0.475484
Target:  5'- cCGCGCCGCgCCCGuGGC-GCGg-CGCc -3'
miRNA:   3'- -GCGCGGCGaGGGU-CCGuCGCagGCGc -5'
3586 5' -64.6 NC_001650.1 + 26924 0.68 0.458118
Target:  5'- cCGgGCCcggcgaagauggGCUUgaagCAGGCGGCGUUCGCGa -3'
miRNA:   3'- -GCgCGG------------CGAGg---GUCCGUCGCAGGCGC- -5'
3586 5' -64.6 NC_001650.1 + 94610 0.68 0.458118
Target:  5'- gGCGCCGCcucagcgcgUCCAGGUAGCccucGUcccCCGCGu -3'
miRNA:   3'- gCGCGGCGa--------GGGUCCGUCG----CA---GGCGC- -5'
3586 5' -64.6 NC_001650.1 + 21989 0.68 0.438574
Target:  5'- gGCGCC-CUCCCcggcgucccccaccAGGgGGCG-CCGCa -3'
miRNA:   3'- gCGCGGcGAGGG--------------UCCgUCGCaGGCGc -5'
3586 5' -64.6 NC_001650.1 + 69657 0.69 0.432721
Target:  5'- gGUGCCGggCCCGGGCcGUGuUCUGCc -3'
miRNA:   3'- gCGCGGCgaGGGUCCGuCGC-AGGCGc -5'
3586 5' -64.6 NC_001650.1 + 131749 0.69 0.432721
Target:  5'- cCGCGuCCaGCcCCCGGGCGGCcacGUugaCCGCGu -3'
miRNA:   3'- -GCGC-GG-CGaGGGUCCGUCG---CA---GGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.