miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3586 5' -64.6 NC_001650.1 + 51065 0.67 0.547892
Target:  5'- uGCGCUGCgCCagcagaaaGGGCAGCucgCCGCc -3'
miRNA:   3'- gCGCGGCGaGGg-------UCCGUCGca-GGCGc -5'
3586 5' -64.6 NC_001650.1 + 52367 0.67 0.547892
Target:  5'- aGCGUgGCUgCCCGGGgaGGCGagCGUGg -3'
miRNA:   3'- gCGCGgCGA-GGGUCCg-UCGCagGCGC- -5'
3586 5' -64.6 NC_001650.1 + 53049 0.73 0.242232
Target:  5'- gCGCGcCCGCUCCCAgGGCGGgcagggcgccgagaaCG-CCGCGc -3'
miRNA:   3'- -GCGC-GGCGAGGGU-CCGUC---------------GCaGGCGC- -5'
3586 5' -64.6 NC_001650.1 + 56912 0.69 0.408164
Target:  5'- gGCGCC-CUCgaGcGGCAGCGggCCGCGa -3'
miRNA:   3'- gCGCGGcGAGggU-CCGUCGCa-GGCGC- -5'
3586 5' -64.6 NC_001650.1 + 57622 0.67 0.528489
Target:  5'- aGUGCCGUgcgcgCCCGGGCcgcagggGGUGggggagCCGCa -3'
miRNA:   3'- gCGCGGCGa----GGGUCCG-------UCGCa-----GGCGc -5'
3586 5' -64.6 NC_001650.1 + 58556 0.69 0.400174
Target:  5'- gGUGUCGCcccccuuggcCCCGGGCagGGCGUCCGgGu -3'
miRNA:   3'- gCGCGGCGa---------GGGUCCG--UCGCAGGCgC- -5'
3586 5' -64.6 NC_001650.1 + 59154 0.67 0.511157
Target:  5'- cCGcCGCCGcCUCCCGGGCcuc--CCGCGc -3'
miRNA:   3'- -GC-GCGGC-GAGGGUCCGucgcaGGCGC- -5'
3586 5' -64.6 NC_001650.1 + 60118 0.72 0.286604
Target:  5'- -cCGCCGC-CCgCggAGGCcGCGUCCGCGg -3'
miRNA:   3'- gcGCGGCGaGG-G--UCCGuCGCAGGCGC- -5'
3586 5' -64.6 NC_001650.1 + 60516 0.66 0.566575
Target:  5'- gGCGCCGgggUCCUGGGCAGaggCgGCGg -3'
miRNA:   3'- gCGCGGCg--AGGGUCCGUCgcaGgCGC- -5'
3586 5' -64.6 NC_001650.1 + 60806 0.67 0.529408
Target:  5'- aGUaGCCGUUCagCAGGCacAGCG-CCGCGu -3'
miRNA:   3'- gCG-CGGCGAGg-GUCCG--UCGCaGGCGC- -5'
3586 5' -64.6 NC_001650.1 + 68852 0.66 0.585417
Target:  5'- aCGUGCCGCgcCCCGGGCccauggCCGCc -3'
miRNA:   3'- -GCGCGGCGa-GGGUCCGucgca-GGCGc -5'
3586 5' -64.6 NC_001650.1 + 69450 0.68 0.475484
Target:  5'- gCGcCGCCGCUcuacucgccCCCGGccucCAGCGcCCGCGc -3'
miRNA:   3'- -GC-GCGGCGA---------GGGUCc---GUCGCaGGCGC- -5'
3586 5' -64.6 NC_001650.1 + 69657 0.69 0.432721
Target:  5'- gGUGCCGggCCCGGGCcGUGuUCUGCc -3'
miRNA:   3'- gCGCGGCgaGGGUCCGuCGC-AGGCGc -5'
3586 5' -64.6 NC_001650.1 + 72953 0.7 0.347124
Target:  5'- cCGCGaacCCGUUCaCCA-GCAGCGUCUGCc -3'
miRNA:   3'- -GCGC---GGCGAG-GGUcCGUCGCAGGCGc -5'
3586 5' -64.6 NC_001650.1 + 79393 0.75 0.169449
Target:  5'- cCGCGCCccgucgcGCcCCCGGGCGGCGccCCGUGg -3'
miRNA:   3'- -GCGCGG-------CGaGGGUCCGUCGCa-GGCGC- -5'
3586 5' -64.6 NC_001650.1 + 79831 0.7 0.339969
Target:  5'- aGCGCCuucugGCUCgCCugcuuGGCAGCGaCCGCc -3'
miRNA:   3'- gCGCGG-----CGAG-GGu----CCGUCGCaGGCGc -5'
3586 5' -64.6 NC_001650.1 + 80258 0.66 0.575979
Target:  5'- aCGgGCUGCUgCUggAGGCGuGCGUCCcCGa -3'
miRNA:   3'- -GCgCGGCGAgGG--UCCGU-CGCAGGcGC- -5'
3586 5' -64.6 NC_001650.1 + 81628 0.66 0.557211
Target:  5'- gCGCGCCGCg--CGGGcCAGCucccccgucacGUUCGCGg -3'
miRNA:   3'- -GCGCGGCGaggGUCC-GUCG-----------CAGGCGC- -5'
3586 5' -64.6 NC_001650.1 + 89476 0.7 0.361756
Target:  5'- uGCGCUggGCcgCCgAGGCGGgGUUCGCGu -3'
miRNA:   3'- gCGCGG--CGa-GGgUCCGUCgCAGGCGC- -5'
3586 5' -64.6 NC_001650.1 + 90227 0.69 0.416253
Target:  5'- gGCGCgCGCUCCgGccgaccGGCGGCGaaCGCGc -3'
miRNA:   3'- gCGCG-GCGAGGgU------CCGUCGCagGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.