miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3586 5' -64.6 NC_001650.1 + 5713 0.66 0.594885
Target:  5'- uGgGCCGCUCCUcccacaagauGGCAGCGcCCu-- -3'
miRNA:   3'- gCgCGGCGAGGGu---------CCGUCGCaGGcgc -5'
3586 5' -64.6 NC_001650.1 + 9077 1.08 0.000768
Target:  5'- gCGCGCCGCUCCCAGGCAGCGUCCGCGa -3'
miRNA:   3'- -GCGCGGCGAGGGUCCGUCGCAGGCGC- -5'
3586 5' -64.6 NC_001650.1 + 15163 0.7 0.347124
Target:  5'- gGCGCCGCgCCaCGGGC-GCGg-CGCGg -3'
miRNA:   3'- gCGCGGCGaGG-GUCCGuCGCagGCGC- -5'
3586 5' -64.6 NC_001650.1 + 15372 0.68 0.475484
Target:  5'- cCGCGCCGCgCCCGuGGC-GCGg-CGCc -3'
miRNA:   3'- -GCGCGGCGaGGGU-CCGuCGCagGCGc -5'
3586 5' -64.6 NC_001650.1 + 21989 0.68 0.438574
Target:  5'- gGCGCC-CUCCCcggcgucccccaccAGGgGGCG-CCGCa -3'
miRNA:   3'- gCGCGGcGAGGG--------------UCCgUCGCaGGCGc -5'
3586 5' -64.6 NC_001650.1 + 22694 0.67 0.50213
Target:  5'- gGgGCCcaUgCCGGGCGGCG-CCGCGc -3'
miRNA:   3'- gCgCGGcgAgGGUCCGUCGCaGGCGC- -5'
3586 5' -64.6 NC_001650.1 + 23891 0.68 0.48429
Target:  5'- uGC-CCGCcucCCCGGGCAagcacGCGUUCGCc -3'
miRNA:   3'- gCGcGGCGa--GGGUCCGU-----CGCAGGCGc -5'
3586 5' -64.6 NC_001650.1 + 24192 0.68 0.475484
Target:  5'- gCGCGCCaGCUugCCCAGGUAcGCc-CCGCu -3'
miRNA:   3'- -GCGCGG-CGA--GGGUCCGU-CGcaGGCGc -5'
3586 5' -64.6 NC_001650.1 + 26755 0.74 0.213318
Target:  5'- uGCGCCGCcUCCAGGCAGCucuuuggcuaCGCGg -3'
miRNA:   3'- gCGCGGCGaGGGUCCGUCGcag-------GCGC- -5'
3586 5' -64.6 NC_001650.1 + 26924 0.68 0.458118
Target:  5'- cCGgGCCcggcgaagauggGCUUgaagCAGGCGGCGUUCGCGa -3'
miRNA:   3'- -GCgCGG------------CGAGg---GUCCGUCGCAGGCGC- -5'
3586 5' -64.6 NC_001650.1 + 29741 0.67 0.520251
Target:  5'- uCGCGCuagCGC-CCCAGGCGGC---CGCGc -3'
miRNA:   3'- -GCGCG---GCGaGGGUCCGUCGcagGCGC- -5'
3586 5' -64.6 NC_001650.1 + 30712 0.67 0.50213
Target:  5'- aCGCGCaggGCaCCgAGGaCAcguacGCGUCCGCGg -3'
miRNA:   3'- -GCGCGg--CGaGGgUCC-GU-----CGCAGGCGC- -5'
3586 5' -64.6 NC_001650.1 + 30885 0.66 0.566575
Target:  5'- -cCGCuCGC-CCCGcGGCGcgcGCGUCCGCc -3'
miRNA:   3'- gcGCG-GCGaGGGU-CCGU---CGCAGGCGc -5'
3586 5' -64.6 NC_001650.1 + 38440 0.66 0.575037
Target:  5'- gCGcCGCCGCUCCgCaaccgggAGGgGGCGcCUGUGa -3'
miRNA:   3'- -GC-GCGGCGAGG-G-------UCCgUCGCaGGCGC- -5'
3586 5' -64.6 NC_001650.1 + 38655 0.66 0.604376
Target:  5'- gGCGCCccCUCCCGguugcggagcGGCGGCGcCacaGCGg -3'
miRNA:   3'- gCGCGGc-GAGGGU----------CCGUCGCaGg--CGC- -5'
3586 5' -64.6 NC_001650.1 + 42852 0.66 0.566575
Target:  5'- uGCGUgGC-CCCGGGCAcGUGUgUCGCc -3'
miRNA:   3'- gCGCGgCGaGGGUCCGU-CGCA-GGCGc -5'
3586 5' -64.6 NC_001650.1 + 46371 0.66 0.575979
Target:  5'- gGCGCCGCaucggCCgCgGGGCAccagauGCG-CCGCGg -3'
miRNA:   3'- gCGCGGCGa----GG-G-UCCGU------CGCaGGCGC- -5'
3586 5' -64.6 NC_001650.1 + 47759 0.71 0.292898
Target:  5'- cCGUGCCGC-CaCCAGGCGGCG-CCa-- -3'
miRNA:   3'- -GCGCGGCGaG-GGUCCGUCGCaGGcgc -5'
3586 5' -64.6 NC_001650.1 + 48257 0.67 0.529408
Target:  5'- gGgGCUGCUUCCAGGCGGCuagCCc-- -3'
miRNA:   3'- gCgCGGCGAGGGUCCGUCGca-GGcgc -5'
3586 5' -64.6 NC_001650.1 + 50476 0.71 0.31847
Target:  5'- cCGC-CCGCUCCCGGGCgcagagaGGCGccccugUCGCGc -3'
miRNA:   3'- -GCGcGGCGAGGGUCCG-------UCGCa-----GGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.