miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3586 5' -64.6 NC_001650.1 + 60516 0.66 0.566575
Target:  5'- gGCGCCGgggUCCUGGGCAGaggCgGCGg -3'
miRNA:   3'- gCGCGGCg--AGGGUCCGUCgcaGgCGC- -5'
3586 5' -64.6 NC_001650.1 + 23891 0.68 0.48429
Target:  5'- uGC-CCGCcucCCCGGGCAagcacGCGUUCGCc -3'
miRNA:   3'- gCGcGGCGa--GGGUCCGU-----CGCAGGCGc -5'
3586 5' -64.6 NC_001650.1 + 164892 0.67 0.507538
Target:  5'- gCGCGCCGCcgccaccccacccCCCGGGCcccaccGCGgCCGCc -3'
miRNA:   3'- -GCGCGGCGa------------GGGUCCGu-----CGCaGGCGc -5'
3586 5' -64.6 NC_001650.1 + 29741 0.67 0.520251
Target:  5'- uCGCGCuagCGC-CCCAGGCGGC---CGCGc -3'
miRNA:   3'- -GCGCG---GCGaGGGUCCGUCGcagGCGC- -5'
3586 5' -64.6 NC_001650.1 + 48257 0.67 0.529408
Target:  5'- gGgGCUGCUUCCAGGCGGCuagCCc-- -3'
miRNA:   3'- gCgCGGCGAGGGUCCGUCGca-GGcgc -5'
3586 5' -64.6 NC_001650.1 + 60806 0.67 0.529408
Target:  5'- aGUaGCCGUUCagCAGGCacAGCG-CCGCGu -3'
miRNA:   3'- gCG-CGGCGAGg-GUCCG--UCGCaGGCGC- -5'
3586 5' -64.6 NC_001650.1 + 52367 0.67 0.547892
Target:  5'- aGCGUgGCUgCCCGGGgaGGCGagCGUGg -3'
miRNA:   3'- gCGCGgCGA-GGGUCCg-UCGCagGCGC- -5'
3586 5' -64.6 NC_001650.1 + 81628 0.66 0.557211
Target:  5'- gCGCGCCGCg--CGGGcCAGCucccccgucacGUUCGCGg -3'
miRNA:   3'- -GCGCGGCGaggGUCC-GUCG-----------CAGGCGC- -5'
3586 5' -64.6 NC_001650.1 + 136639 0.66 0.557211
Target:  5'- gGCGCCcugagGCUCCgCGGGCagagugccaGGCGagCCGCc -3'
miRNA:   3'- gCGCGG-----CGAGG-GUCCG---------UCGCa-GGCGc -5'
3586 5' -64.6 NC_001650.1 + 121324 0.69 0.416253
Target:  5'- gCGCGCCGcCUUCCAcGCGuGCGgccucacCCGCGa -3'
miRNA:   3'- -GCGCGGC-GAGGGUcCGU-CGCa------GGCGC- -5'
3586 5' -64.6 NC_001650.1 + 58556 0.69 0.400174
Target:  5'- gGUGUCGCcccccuuggcCCCGGGCagGGCGUCCGgGu -3'
miRNA:   3'- gCGCGGCGa---------GGGUCCG--UCGCAGGCgC- -5'
3586 5' -64.6 NC_001650.1 + 118236 0.69 0.384497
Target:  5'- aGCGCUcgggGUUCUCGGGCAGCuuggCCGCc -3'
miRNA:   3'- gCGCGG----CGAGGGUCCGUCGca--GGCGc -5'
3586 5' -64.6 NC_001650.1 + 26755 0.74 0.213318
Target:  5'- uGCGCCGCcUCCAGGCAGCucuuuggcuaCGCGg -3'
miRNA:   3'- gCGCGGCGaGGGUCCGUCGcag-------GCGC- -5'
3586 5' -64.6 NC_001650.1 + 96040 0.73 0.233125
Target:  5'- uCGCuGUCGCUgucaucggcagcgcCCCcGGCAcGCGUCCGCGg -3'
miRNA:   3'- -GCG-CGGCGA--------------GGGuCCGU-CGCAGGCGC- -5'
3586 5' -64.6 NC_001650.1 + 60118 0.72 0.286604
Target:  5'- -cCGCCGC-CCgCggAGGCcGCGUCCGCGg -3'
miRNA:   3'- gcGCGGCGaGG-G--UCCGuCGCAGGCGC- -5'
3586 5' -64.6 NC_001650.1 + 79831 0.7 0.339969
Target:  5'- aGCGCCuucugGCUCgCCugcuuGGCAGCGaCCGCc -3'
miRNA:   3'- gCGCGG-----CGAG-GGu----CCGUCGCaGGCGc -5'
3586 5' -64.6 NC_001650.1 + 15163 0.7 0.347124
Target:  5'- gGCGCCGCgCCaCGGGC-GCGg-CGCGg -3'
miRNA:   3'- gCGCGGCGaGG-GUCCGuCGCagGCGC- -5'
3586 5' -64.6 NC_001650.1 + 181870 0.7 0.347124
Target:  5'- gGCGCCGCgCCaCGGGC-GCGg-CGCGg -3'
miRNA:   3'- gCGCGGCGaGG-GUCCGuCGCagGCGC- -5'
3586 5' -64.6 NC_001650.1 + 89476 0.7 0.361756
Target:  5'- uGCGCUggGCcgCCgAGGCGGgGUUCGCGu -3'
miRNA:   3'- gCGCGG--CGa-GGgUCCGUCgCAGGCGC- -5'
3586 5' -64.6 NC_001650.1 + 164648 0.7 0.376812
Target:  5'- cCGCGCgGCaCCCGGGCucccgGGgGaCCGCGg -3'
miRNA:   3'- -GCGCGgCGaGGGUCCG-----UCgCaGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.