Results 1 - 20 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3586 | 5' | -64.6 | NC_001650.1 | + | 175784 | 1.08 | 0.000768 |
Target: 5'- gCGCGCCGCUCCCAGGCAGCGUCCGCGa -3' miRNA: 3'- -GCGCGGCGAGGGUCCGUCGCAGGCGC- -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 56912 | 0.69 | 0.408164 |
Target: 5'- gGCGCC-CUCgaGcGGCAGCGggCCGCGa -3' miRNA: 3'- gCGCGGcGAGggU-CCGUCGCa-GGCGC- -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 69657 | 0.69 | 0.432721 |
Target: 5'- gGUGCCGggCCCGGGCcGUGuUCUGCc -3' miRNA: 3'- gCGCGGCgaGGGUCCGuCGC-AGGCGc -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 38655 | 0.66 | 0.604376 |
Target: 5'- gGCGCCccCUCCCGguugcggagcGGCGGCGcCacaGCGg -3' miRNA: 3'- gCGCGGc-GAGGGU----------CCGUCGCaGg--CGC- -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 133143 | 0.73 | 0.224307 |
Target: 5'- uCGCGCCGCggggggaccCUCGGGCGGCuguaGUCuCGCGg -3' miRNA: 3'- -GCGCGGCGa--------GGGUCCGUCG----CAG-GCGC- -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 121271 | 0.73 | 0.224307 |
Target: 5'- cCGCGCCGCggcgucCCCGGGCAGggcguCGUCCa-- -3' miRNA: 3'- -GCGCGGCGa-----GGGUCCGUC-----GCAGGcgc -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 53049 | 0.73 | 0.242232 |
Target: 5'- gCGCGcCCGCUCCCAgGGCGGgcagggcgccgagaaCG-CCGCGc -3' miRNA: 3'- -GCGC-GGCGAGGGU-CCGUC---------------GCaGGCGC- -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 47759 | 0.71 | 0.292898 |
Target: 5'- cCGUGCCGC-CaCCAGGCGGCG-CCa-- -3' miRNA: 3'- -GCGCGGCGaG-GGUCCGUCGCaGGcgc -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 50476 | 0.71 | 0.31847 |
Target: 5'- cCGC-CCGCUCCCGGGCgcagagaGGCGccccugUCGCGc -3' miRNA: 3'- -GCGcGGCGAGGGUCCG-------UCGCa-----GGCGC- -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 134953 | 0.69 | 0.408164 |
Target: 5'- gGCGCCGcCUCCaCA-GCAGCaucugggggGUCCGCc -3' miRNA: 3'- gCGCGGC-GAGG-GUcCGUCG---------CAGGCGc -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 72953 | 0.7 | 0.347124 |
Target: 5'- cCGCGaacCCGUUCaCCA-GCAGCGUCUGCc -3' miRNA: 3'- -GCGC---GGCGAG-GGUcCGUCGCAGGCGc -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 134101 | 0.71 | 0.30319 |
Target: 5'- gGCGCCGCggUCCCAGGggcggccucuagaGGCGaCCGCu -3' miRNA: 3'- gCGCGGCG--AGGGUCCg------------UCGCaGGCGc -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 9077 | 1.08 | 0.000768 |
Target: 5'- gCGCGCCGCUCCCAGGCAGCGUCCGCGa -3' miRNA: 3'- -GCGCGGCGAGGGUCCGUCGCAGGCGC- -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 164610 | 0.7 | 0.354387 |
Target: 5'- cCGCGCCuGuCUCUCAGGCugGGCGaguUCUGCa -3' miRNA: 3'- -GCGCGG-C-GAGGGUCCG--UCGC---AGGCGc -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 164842 | 0.79 | 0.095144 |
Target: 5'- gGUGCCGCgcggCCCgGGGCGGCGuUCCGCu -3' miRNA: 3'- gCGCGGCGa---GGG-UCCGUCGC-AGGCGc -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 155932 | 0.71 | 0.295445 |
Target: 5'- cCGCGCUGCacgCCCuGGUcaacuccggcuucgaGGUGUCCGUGg -3' miRNA: 3'- -GCGCGGCGa--GGGuCCG---------------UCGCAGGCGC- -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 121082 | 0.7 | 0.361756 |
Target: 5'- gCGCGCCGCcCCCAGcGC--CG-CCGCGu -3' miRNA: 3'- -GCGCGGCGaGGGUC-CGucGCaGGCGC- -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 90227 | 0.69 | 0.416253 |
Target: 5'- gGCGCgCGCUCCgGccgaccGGCGGCGaaCGCGc -3' miRNA: 3'- gCGCG-GCGAGGgU------CCGUCGCagGCGC- -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 124360 | 0.74 | 0.204673 |
Target: 5'- gGCGCUGUUCCCAucGGCAgGCGcUCCGUc -3' miRNA: 3'- gCGCGGCGAGGGU--CCGU-CGC-AGGCGc -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 93722 | 0.73 | 0.229459 |
Target: 5'- cCGCGCCGCUCUuguaCAGGgGG-GUCUGCa -3' miRNA: 3'- -GCGCGGCGAGG----GUCCgUCgCAGGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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