miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3586 5' -64.6 NC_001650.1 + 175784 1.08 0.000768
Target:  5'- gCGCGCCGCUCCCAGGCAGCGUCCGCGa -3'
miRNA:   3'- -GCGCGGCGAGGGUCCGUCGCAGGCGC- -5'
3586 5' -64.6 NC_001650.1 + 9077 1.08 0.000768
Target:  5'- gCGCGCCGCUCCCAGGCAGCGUCCGCGa -3'
miRNA:   3'- -GCGCGGCGAGGGUCCGUCGCAGGCGC- -5'
3586 5' -64.6 NC_001650.1 + 164842 0.79 0.095144
Target:  5'- gGUGCCGCgcggCCCgGGGCGGCGuUCCGCu -3'
miRNA:   3'- gCGCGGCGa---GGG-UCCGUCGC-AGGCGc -5'
3586 5' -64.6 NC_001650.1 + 79393 0.75 0.169449
Target:  5'- cCGCGCCccgucgcGCcCCCGGGCGGCGccCCGUGg -3'
miRNA:   3'- -GCGCGG-------CGaGGGUCCGUCGCa-GGCGC- -5'
3586 5' -64.6 NC_001650.1 + 124360 0.74 0.204673
Target:  5'- gGCGCUGUUCCCAucGGCAgGCGcUCCGUc -3'
miRNA:   3'- gCGCGGCGAGGGU--CCGU-CGC-AGGCGc -5'
3586 5' -64.6 NC_001650.1 + 26755 0.74 0.213318
Target:  5'- uGCGCCGCcUCCAGGCAGCucuuuggcuaCGCGg -3'
miRNA:   3'- gCGCGGCGaGGGUCCGUCGcag-------GCGC- -5'
3586 5' -64.6 NC_001650.1 + 133143 0.73 0.224307
Target:  5'- uCGCGCCGCggggggaccCUCGGGCGGCuguaGUCuCGCGg -3'
miRNA:   3'- -GCGCGGCGa--------GGGUCCGUCG----CAG-GCGC- -5'
3586 5' -64.6 NC_001650.1 + 121271 0.73 0.224307
Target:  5'- cCGCGCCGCggcgucCCCGGGCAGggcguCGUCCa-- -3'
miRNA:   3'- -GCGCGGCGa-----GGGUCCGUC-----GCAGGcgc -5'
3586 5' -64.6 NC_001650.1 + 93722 0.73 0.229459
Target:  5'- cCGCGCCGCUCUuguaCAGGgGG-GUCUGCa -3'
miRNA:   3'- -GCGCGGCGAGG----GUCCgUCgCAGGCGc -5'
3586 5' -64.6 NC_001650.1 + 96040 0.73 0.233125
Target:  5'- uCGCuGUCGCUgucaucggcagcgcCCCcGGCAcGCGUCCGCGg -3'
miRNA:   3'- -GCG-CGGCGA--------------GGGuCCGU-CGCAGGCGC- -5'
3586 5' -64.6 NC_001650.1 + 53049 0.73 0.242232
Target:  5'- gCGCGcCCGCUCCCAgGGCGGgcagggcgccgagaaCG-CCGCGc -3'
miRNA:   3'- -GCGC-GGCGAGGGU-CCGUC---------------GCaGGCGC- -5'
3586 5' -64.6 NC_001650.1 + 60118 0.72 0.286604
Target:  5'- -cCGCCGC-CCgCggAGGCcGCGUCCGCGg -3'
miRNA:   3'- gcGCGGCGaGG-G--UCCGuCGCAGGCGC- -5'
3586 5' -64.6 NC_001650.1 + 47759 0.71 0.292898
Target:  5'- cCGUGCCGC-CaCCAGGCGGCG-CCa-- -3'
miRNA:   3'- -GCGCGGCGaG-GGUCCGUCGCaGGcgc -5'
3586 5' -64.6 NC_001650.1 + 155932 0.71 0.295445
Target:  5'- cCGCGCUGCacgCCCuGGUcaacuccggcuucgaGGUGUCCGUGg -3'
miRNA:   3'- -GCGCGGCGa--GGGuCCG---------------UCGCAGGCGC- -5'
3586 5' -64.6 NC_001650.1 + 134101 0.71 0.30319
Target:  5'- gGCGCCGCggUCCCAGGggcggccucuagaGGCGaCCGCu -3'
miRNA:   3'- gCGCGGCG--AGGGUCCg------------UCGCaGGCGc -5'
3586 5' -64.6 NC_001650.1 + 50476 0.71 0.31847
Target:  5'- cCGC-CCGCUCCCGGGCgcagagaGGCGccccugUCGCGc -3'
miRNA:   3'- -GCGcGGCGAGGGUCCG-------UCGCa-----GGCGC- -5'
3586 5' -64.6 NC_001650.1 + 102798 0.7 0.339969
Target:  5'- uCGCuGCUGCaUCUgGGGCgagGGCGUCUGCGc -3'
miRNA:   3'- -GCG-CGGCG-AGGgUCCG---UCGCAGGCGC- -5'
3586 5' -64.6 NC_001650.1 + 79831 0.7 0.339969
Target:  5'- aGCGCCuucugGCUCgCCugcuuGGCAGCGaCCGCc -3'
miRNA:   3'- gCGCGG-----CGAG-GGu----CCGUCGCaGGCGc -5'
3586 5' -64.6 NC_001650.1 + 181870 0.7 0.347124
Target:  5'- gGCGCCGCgCCaCGGGC-GCGg-CGCGg -3'
miRNA:   3'- gCGCGGCGaGG-GUCCGuCGCagGCGC- -5'
3586 5' -64.6 NC_001650.1 + 15163 0.7 0.347124
Target:  5'- gGCGCCGCgCCaCGGGC-GCGg-CGCGg -3'
miRNA:   3'- gCGCGGCGaGG-GUCCGuCGCagGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.