Results 21 - 40 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3586 | 5' | -64.6 | NC_001650.1 | + | 181870 | 0.7 | 0.347124 |
Target: 5'- gGCGCCGCgCCaCGGGC-GCGg-CGCGg -3' miRNA: 3'- gCGCGGCGaGG-GUCCGuCGCagGCGC- -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 164610 | 0.7 | 0.354387 |
Target: 5'- cCGCGCCuGuCUCUCAGGCugGGCGaguUCUGCa -3' miRNA: 3'- -GCGCGG-C-GAGGGUCCG--UCGC---AGGCGc -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 121082 | 0.7 | 0.361756 |
Target: 5'- gCGCGCCGCcCCCAGcGC--CG-CCGCGu -3' miRNA: 3'- -GCGCGGCGaGGGUC-CGucGCaGGCGC- -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 89476 | 0.7 | 0.361756 |
Target: 5'- uGCGCUggGCcgCCgAGGCGGgGUUCGCGu -3' miRNA: 3'- gCGCGG--CGa-GGgUCCGUCgCAGGCGC- -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 164648 | 0.7 | 0.376812 |
Target: 5'- cCGCGCgGCaCCCGGGCucccgGGgGaCCGCGg -3' miRNA: 3'- -GCGCGgCGaGGGUCCG-----UCgCaGGCGC- -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 118236 | 0.69 | 0.384497 |
Target: 5'- aGCGCUcgggGUUCUCGGGCAGCuuggCCGCc -3' miRNA: 3'- gCGCGG----CGAGGGUCCGUCGca--GGCGc -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 58556 | 0.69 | 0.400174 |
Target: 5'- gGUGUCGCcccccuuggcCCCGGGCagGGCGUCCGgGu -3' miRNA: 3'- gCGCGGCGa---------GGGUCCG--UCGCAGGCgC- -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 56912 | 0.69 | 0.408164 |
Target: 5'- gGCGCC-CUCgaGcGGCAGCGggCCGCGa -3' miRNA: 3'- gCGCGGcGAGggU-CCGUCGCa-GGCGC- -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 134953 | 0.69 | 0.408164 |
Target: 5'- gGCGCCGcCUCCaCA-GCAGCaucugggggGUCCGCc -3' miRNA: 3'- gCGCGGC-GAGG-GUcCGUCG---------CAGGCGc -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 90227 | 0.69 | 0.416253 |
Target: 5'- gGCGCgCGCUCCgGccgaccGGCGGCGaaCGCGc -3' miRNA: 3'- gCGCG-GCGAGGgU------CCGUCGCagGCGC- -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 121324 | 0.69 | 0.416253 |
Target: 5'- gCGCGCCGcCUUCCAcGCGuGCGgccucacCCGCGa -3' miRNA: 3'- -GCGCGGC-GAGGGUcCGU-CGCa------GGCGC- -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 131749 | 0.69 | 0.432721 |
Target: 5'- cCGCGuCCaGCcCCCGGGCGGCcacGUugaCCGCGu -3' miRNA: 3'- -GCGC-GG-CGaGGGUCCGUCG---CA---GGCGC- -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 69657 | 0.69 | 0.432721 |
Target: 5'- gGUGCCGggCCCGGGCcGUGuUCUGCc -3' miRNA: 3'- gCGCGGCgaGGGUCCGuCGC-AGGCGc -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 21989 | 0.68 | 0.438574 |
Target: 5'- gGCGCC-CUCCCcggcgucccccaccAGGgGGCG-CCGCa -3' miRNA: 3'- gCGCGGcGAGGG--------------UCCgUCGCaGGCGc -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 94610 | 0.68 | 0.458118 |
Target: 5'- gGCGCCGCcucagcgcgUCCAGGUAGCccucGUcccCCGCGu -3' miRNA: 3'- gCGCGGCGa--------GGGUCCGUCG----CA---GGCGC- -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 26924 | 0.68 | 0.458118 |
Target: 5'- cCGgGCCcggcgaagauggGCUUgaagCAGGCGGCGUUCGCGa -3' miRNA: 3'- -GCgCGG------------CGAGg---GUCCGUCGCAGGCGC- -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 15372 | 0.68 | 0.475484 |
Target: 5'- cCGCGCCGCgCCCGuGGC-GCGg-CGCc -3' miRNA: 3'- -GCGCGGCGaGGGU-CCGuCGCagGCGc -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 24192 | 0.68 | 0.475484 |
Target: 5'- gCGCGCCaGCUugCCCAGGUAcGCc-CCGCu -3' miRNA: 3'- -GCGCGG-CGA--GGGUCCGU-CGcaGGCGc -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 69450 | 0.68 | 0.475484 |
Target: 5'- gCGcCGCCGCUcuacucgccCCCGGccucCAGCGcCCGCGc -3' miRNA: 3'- -GC-GCGGCGA---------GGGUCc---GUCGCaGGCGC- -5' |
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3586 | 5' | -64.6 | NC_001650.1 | + | 182079 | 0.68 | 0.475484 |
Target: 5'- cCGCGCCGCgCCCGuGGC-GCGg-CGCc -3' miRNA: 3'- -GCGCGGCGaGGGU-CCGuCGCagGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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