miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3586 5' -64.6 NC_001650.1 + 182079 0.68 0.475484
Target:  5'- cCGCGCCGCgCCCGuGGC-GCGg-CGCc -3'
miRNA:   3'- -GCGCGGCGaGGGU-CCGuCGCagGCGc -5'
3586 5' -64.6 NC_001650.1 + 181870 0.7 0.347124
Target:  5'- gGCGCCGCgCCaCGGGC-GCGg-CGCGg -3'
miRNA:   3'- gCGCGGCGaGG-GUCCGuCGCagGCGC- -5'
3586 5' -64.6 NC_001650.1 + 175784 1.08 0.000768
Target:  5'- gCGCGCCGCUCCCAGGCAGCGUCCGCGa -3'
miRNA:   3'- -GCGCGGCGAGGGUCCGUCGCAGGCGC- -5'
3586 5' -64.6 NC_001650.1 + 172420 0.66 0.594885
Target:  5'- uGgGCCGCUCCUcccacaagauGGCAGCGcCCu-- -3'
miRNA:   3'- gCgCGGCGAGGGu---------CCGUCGCaGGcgc -5'
3586 5' -64.6 NC_001650.1 + 165155 0.66 0.570332
Target:  5'- aCGCGCCGgaCCggggaGccggggugagagacuGGCGGCGgCCGCGg -3'
miRNA:   3'- -GCGCGGCgaGGg----U---------------CCGUCGCaGGCGC- -5'
3586 5' -64.6 NC_001650.1 + 164892 0.67 0.507538
Target:  5'- gCGCGCCGCcgccaccccacccCCCGGGCcccaccGCGgCCGCc -3'
miRNA:   3'- -GCGCGGCGa------------GGGUCCGu-----CGCaGGCGc -5'
3586 5' -64.6 NC_001650.1 + 164842 0.79 0.095144
Target:  5'- gGUGCCGCgcggCCCgGGGCGGCGuUCCGCu -3'
miRNA:   3'- gCGCGGCGa---GGG-UCCGUCGC-AGGCGc -5'
3586 5' -64.6 NC_001650.1 + 164648 0.7 0.376812
Target:  5'- cCGCGCgGCaCCCGGGCucccgGGgGaCCGCGg -3'
miRNA:   3'- -GCGCGgCGaGGGUCCG-----UCgCaGGCGC- -5'
3586 5' -64.6 NC_001650.1 + 164610 0.7 0.354387
Target:  5'- cCGCGCCuGuCUCUCAGGCugGGCGaguUCUGCa -3'
miRNA:   3'- -GCGCGG-C-GAGGGUCCG--UCGC---AGGCGc -5'
3586 5' -64.6 NC_001650.1 + 155932 0.71 0.295445
Target:  5'- cCGCGCUGCacgCCCuGGUcaacuccggcuucgaGGUGUCCGUGg -3'
miRNA:   3'- -GCGCGGCGa--GGGuCCG---------------UCGCAGGCGC- -5'
3586 5' -64.6 NC_001650.1 + 146468 0.66 0.575979
Target:  5'- -cCGCgGC-CCUAGGCGGCccgggcgCCGCGa -3'
miRNA:   3'- gcGCGgCGaGGGUCCGUCGca-----GGCGC- -5'
3586 5' -64.6 NC_001650.1 + 143105 0.66 0.575979
Target:  5'- gCGCGCCgGCUgCaCGGGCcggGGCGgCgGCGg -3'
miRNA:   3'- -GCGCGG-CGAgG-GUCCG---UCGCaGgCGC- -5'
3586 5' -64.6 NC_001650.1 + 136827 0.66 0.557211
Target:  5'- gGCGCCccgacGCcCCCGGGCGGUGggCUGgGu -3'
miRNA:   3'- gCGCGG-----CGaGGGUCCGUCGCa-GGCgC- -5'
3586 5' -64.6 NC_001650.1 + 136639 0.66 0.557211
Target:  5'- gGCGCCcugagGCUCCgCGGGCagagugccaGGCGagCCGCc -3'
miRNA:   3'- gCGCGG-----CGAGG-GUCCG---------UCGCa-GGCGc -5'
3586 5' -64.6 NC_001650.1 + 134953 0.69 0.408164
Target:  5'- gGCGCCGcCUCCaCA-GCAGCaucugggggGUCCGCc -3'
miRNA:   3'- gCGCGGC-GAGG-GUcCGUCG---------CAGGCGc -5'
3586 5' -64.6 NC_001650.1 + 134101 0.71 0.30319
Target:  5'- gGCGCCGCggUCCCAGGggcggccucuagaGGCGaCCGCu -3'
miRNA:   3'- gCGCGGCG--AGGGUCCg------------UCGCaGGCGc -5'
3586 5' -64.6 NC_001650.1 + 133143 0.73 0.224307
Target:  5'- uCGCGCCGCggggggaccCUCGGGCGGCuguaGUCuCGCGg -3'
miRNA:   3'- -GCGCGGCGa--------GGGUCCGUCG----CAG-GCGC- -5'
3586 5' -64.6 NC_001650.1 + 131749 0.69 0.432721
Target:  5'- cCGCGuCCaGCcCCCGGGCGGCcacGUugaCCGCGu -3'
miRNA:   3'- -GCGC-GG-CGaGGGUCCGUCG---CA---GGCGC- -5'
3586 5' -64.6 NC_001650.1 + 130198 0.67 0.529408
Target:  5'- cCGCGCCGCcCUCA-GCAGCcucaggGcCCGCGc -3'
miRNA:   3'- -GCGCGGCGaGGGUcCGUCG------CaGGCGC- -5'
3586 5' -64.6 NC_001650.1 + 124360 0.74 0.204673
Target:  5'- gGCGCUGUUCCCAucGGCAgGCGcUCCGUc -3'
miRNA:   3'- gCGCGGCGAGGGU--CCGU-CGC-AGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.