miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3587 5' -52.2 NC_001650.1 + 156543 0.67 0.978666
Target:  5'- gGCUGAGgcacccccUGCCccccgUCGAGGCC-C-ACCg -3'
miRNA:   3'- aUGACUC--------ACGGa----AGCUCUGGuGaUGG- -5'
3587 5' -52.2 NC_001650.1 + 175950 1.11 0.005349
Target:  5'- cUACUGAGUGCCUUCGAGACCACUACCa -3'
miRNA:   3'- -AUGACUCACGGAAGCUCUGGUGAUGG- -5'
3587 5' -52.2 NC_001650.1 + 9243 1.11 0.005349
Target:  5'- cUACUGAGUGCCUUCGAGACCACUACCa -3'
miRNA:   3'- -AUGACUCACGGAAGCUCUGGUGAUGG- -5'
3587 5' -52.2 NC_001650.1 + 44112 0.7 0.919136
Target:  5'- ---aGAGUGCCUg-GAGAucccuCCAUUACCa -3'
miRNA:   3'- augaCUCACGGAagCUCU-----GGUGAUGG- -5'
3587 5' -52.2 NC_001650.1 + 60046 0.69 0.935313
Target:  5'- -cCUGGGcUGCCUgccCGuGACCAUgGCCg -3'
miRNA:   3'- auGACUC-ACGGAa--GCuCUGGUGaUGG- -5'
3587 5' -52.2 NC_001650.1 + 126008 0.68 0.957365
Target:  5'- cGCUGGGauugauccGCCUUCGAcGCCGC-GCCc -3'
miRNA:   3'- aUGACUCa-------CGGAAGCUcUGGUGaUGG- -5'
3587 5' -52.2 NC_001650.1 + 126072 0.68 0.964531
Target:  5'- gUGCUGGGUGCgCUguuggCGAgcGugCACcGCCu -3'
miRNA:   3'- -AUGACUCACG-GAa----GCU--CugGUGaUGG- -5'
3587 5' -52.2 NC_001650.1 + 156907 0.68 0.97196
Target:  5'- aUGCUGGGaccgGCCUUUGAgcuggcccagcuccaGAUCACcGCCg -3'
miRNA:   3'- -AUGACUCa---CGGAAGCU---------------CUGGUGaUGG- -5'
3587 5' -52.2 NC_001650.1 + 76844 0.67 0.976244
Target:  5'- gGCcGAGaaggcgcgcGCCUUCGAGACCuucauCUACg -3'
miRNA:   3'- aUGaCUCa--------CGGAAGCUCUGGu----GAUGg -5'
3587 5' -52.2 NC_001650.1 + 111022 0.66 0.99083
Target:  5'- gGCUGGGcaGCCUggcucUGAGGCUGCUGgCg -3'
miRNA:   3'- aUGACUCa-CGGAa----GCUCUGGUGAUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.