miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3587 5' -52.2 NC_001650.1 + 114174 0.67 0.9809
Target:  5'- -uCUGuGUGgcugcccgucaCCUUCGAGGCUGuCUACCu -3'
miRNA:   3'- auGACuCAC-----------GGAAGCUCUGGU-GAUGG- -5'
3587 5' -52.2 NC_001650.1 + 4464 0.67 0.982757
Target:  5'- gGCUGGGUGgaggguaCCUcgcggucaUCGcauGACCAUUACCu -3'
miRNA:   3'- aUGACUCAC-------GGA--------AGCu--CUGGUGAUGG- -5'
3587 5' -52.2 NC_001650.1 + 171171 0.67 0.982757
Target:  5'- gGCUGGGUGgaggguaCCUcgcggucaUCGcauGACCAUUACCu -3'
miRNA:   3'- aUGACUCAC-------GGA--------AGCu--CUGGUGAUGG- -5'
3587 5' -52.2 NC_001650.1 + 165677 0.67 0.982954
Target:  5'- ---cGGGUGCUUccUCG-GGCCGCUcGCCu -3'
miRNA:   3'- augaCUCACGGA--AGCuCUGGUGA-UGG- -5'
3587 5' -52.2 NC_001650.1 + 114490 0.66 0.984837
Target:  5'- -cCUGAcgauGgcgGCCUUCGGGACCGggaUGCUg -3'
miRNA:   3'- auGACU----Ca--CGGAAGCUCUGGUg--AUGG- -5'
3587 5' -52.2 NC_001650.1 + 116140 0.66 0.986558
Target:  5'- gGCUGAcauaaacagGUuCCUg-GAGGCCACUGCUg -3'
miRNA:   3'- aUGACU---------CAcGGAagCUCUGGUGAUGG- -5'
3587 5' -52.2 NC_001650.1 + 67931 0.66 0.988124
Target:  5'- aUGCUGAG-GCacaucUCGAgGACCAUggGCCu -3'
miRNA:   3'- -AUGACUCaCGga---AGCU-CUGGUGa-UGG- -5'
3587 5' -52.2 NC_001650.1 + 146089 0.66 0.988124
Target:  5'- ---gGAG-GCaCUUCGGGGCCGCgUACg -3'
miRNA:   3'- augaCUCaCG-GAAGCUCUGGUG-AUGg -5'
3587 5' -52.2 NC_001650.1 + 137215 0.66 0.988124
Target:  5'- gGCUGGGUGgaccCCUUggcgaacacgUGAGGCCccgcggcgcACUGCCa -3'
miRNA:   3'- aUGACUCAC----GGAA----------GCUCUGG---------UGAUGG- -5'
3587 5' -52.2 NC_001650.1 + 111022 0.66 0.99083
Target:  5'- gGCUGGGcaGCCUggcucUGAGGCUGCUGgCg -3'
miRNA:   3'- aUGACUCa-CGGAa----GCUCUGGUGAUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.