miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3588 3' -56.9 NC_001650.1 + 11359 1.1 0.002935
Target:  5'- gCGCUGGGGUCAGGUCUCUGGAUCAGGc -3'
miRNA:   3'- -GCGACCCCAGUCCAGAGACCUAGUCC- -5'
3588 3' -56.9 NC_001650.1 + 178066 1.1 0.002935
Target:  5'- gCGCUGGGGUCAGGUCUCUGGAUCAGGc -3'
miRNA:   3'- -GCGACCCCAGUCCAGAGACCUAGUCC- -5'
3588 3' -56.9 NC_001650.1 + 24309 0.75 0.442072
Target:  5'- aCGCggGGGGaUCAGGUCUUauUGGAgugcgagCAGGa -3'
miRNA:   3'- -GCGa-CCCC-AGUCCAGAG--ACCUa------GUCC- -5'
3588 3' -56.9 NC_001650.1 + 106856 0.74 0.515666
Target:  5'- gCGCUGGGGUCGGGcCcggggUGGAUgaCAGGu -3'
miRNA:   3'- -GCGACCCCAGUCCaGag---ACCUA--GUCC- -5'
3588 3' -56.9 NC_001650.1 + 46458 0.74 0.515666
Target:  5'- cCGC-GGGGcaucccgcuuUCGGGUCUCgGGGUCAGa -3'
miRNA:   3'- -GCGaCCCC----------AGUCCAGAGaCCUAGUCc -5'
3588 3' -56.9 NC_001650.1 + 151749 0.71 0.683317
Target:  5'- gGCUcGGGUCcuGGUC-CUGGAUCuGGu -3'
miRNA:   3'- gCGAcCCCAGu-CCAGaGACCUAGuCC- -5'
3588 3' -56.9 NC_001650.1 + 77025 0.7 0.741573
Target:  5'- gGgUGGGGuUCAGGcCgcgCUGGGccUCGGGg -3'
miRNA:   3'- gCgACCCC-AGUCCaGa--GACCU--AGUCC- -5'
3588 3' -56.9 NC_001650.1 + 87481 0.69 0.785013
Target:  5'- gGgUGGGcGUCAGGUgUUUGGccacguuucucucgGUCAGGu -3'
miRNA:   3'- gCgACCC-CAGUCCAgAGACC--------------UAGUCC- -5'
3588 3' -56.9 NC_001650.1 + 155854 0.68 0.813843
Target:  5'- gGCUGGGGgcguucgCGGGgCUCgUGGugagCGGGg -3'
miRNA:   3'- gCGACCCCa------GUCCaGAG-ACCua--GUCC- -5'
3588 3' -56.9 NC_001650.1 + 49573 0.68 0.830502
Target:  5'- uGCacGGGGU--GGUCUCUGuGAUgGGGg -3'
miRNA:   3'- gCGa-CCCCAguCCAGAGAC-CUAgUCC- -5'
3588 3' -56.9 NC_001650.1 + 95702 0.68 0.830502
Target:  5'- gCGCcGGGGagGGGgagcCUCUugggcccgaGGAUCAGGu -3'
miRNA:   3'- -GCGaCCCCagUCCa---GAGA---------CCUAGUCC- -5'
3588 3' -56.9 NC_001650.1 + 139062 0.68 0.846474
Target:  5'- aGCUGGGGcaaaCAuGGUCuUCUGGGgauGGGa -3'
miRNA:   3'- gCGACCCCa---GU-CCAG-AGACCUag-UCC- -5'
3588 3' -56.9 NC_001650.1 + 85881 0.68 0.846474
Target:  5'- gGCcGGGGUCAGGuuccucuuccUCUUUGGGgagAGGu -3'
miRNA:   3'- gCGaCCCCAGUCC----------AGAGACCUag-UCC- -5'
3588 3' -56.9 NC_001650.1 + 1953 0.67 0.869031
Target:  5'- gGCcaaUGGGGagAGGgugggUUGGGUCAGGg -3'
miRNA:   3'- gCG---ACCCCagUCCaga--GACCUAGUCC- -5'
3588 3' -56.9 NC_001650.1 + 168660 0.67 0.869031
Target:  5'- gGCcaaUGGGGagAGGgugggUUGGGUCAGGg -3'
miRNA:   3'- gCG---ACCCCagUCCaga--GACCUAGUCC- -5'
3588 3' -56.9 NC_001650.1 + 88524 0.67 0.869031
Target:  5'- aGCgGGGGcgCcGGUCUCUGGAaaAGa -3'
miRNA:   3'- gCGaCCCCa-GuCCAGAGACCUagUCc -5'
3588 3' -56.9 NC_001650.1 + 145498 0.67 0.883067
Target:  5'- gGCcgGGGGcUCcuGGUCagCUGGAgcuUCAGGg -3'
miRNA:   3'- gCGa-CCCC-AGu-CCAGa-GACCU---AGUCC- -5'
3588 3' -56.9 NC_001650.1 + 90124 0.67 0.889769
Target:  5'- cCGC-GGGGUCugGGGcCUC-GG-UCAGGg -3'
miRNA:   3'- -GCGaCCCCAG--UCCaGAGaCCuAGUCC- -5'
3588 3' -56.9 NC_001650.1 + 4651 0.67 0.889769
Target:  5'- ---aGGGGUCuuuguccgggGGGUCUUUGGGggucCGGGg -3'
miRNA:   3'- gcgaCCCCAG----------UCCAGAGACCUa---GUCC- -5'
3588 3' -56.9 NC_001650.1 + 171358 0.67 0.889769
Target:  5'- ---aGGGGUCuuuguccgggGGGUCUUUGGGggucCGGGg -3'
miRNA:   3'- gcgaCCCCAG----------UCCAGAGACCUa---GUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.