Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3588 | 3' | -56.9 | NC_001650.1 | + | 24309 | 0.75 | 0.442072 |
Target: 5'- aCGCggGGGGaUCAGGUCUUauUGGAgugcgagCAGGa -3' miRNA: 3'- -GCGa-CCCC-AGUCCAGAG--ACCUa------GUCC- -5' |
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3588 | 3' | -56.9 | NC_001650.1 | + | 52408 | 0.67 | 0.89239 |
Target: 5'- aGCgUGGGaaaauauuucaaagaGUgGgGGUCUCUGGcgCAGGg -3' miRNA: 3'- gCG-ACCC---------------CAgU-CCAGAGACCuaGUCC- -5' |
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3588 | 3' | -56.9 | NC_001650.1 | + | 151393 | 0.66 | 0.90857 |
Target: 5'- gGCUccGGuUCAGG-CUCUGGuUCAGGu -3' miRNA: 3'- gCGAccCC-AGUCCaGAGACCuAGUCC- -5' |
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3588 | 3' | -56.9 | NC_001650.1 | + | 151435 | 0.66 | 0.90857 |
Target: 5'- gGCUccGGuUCAGG-CUCUGGcUCAGGu -3' miRNA: 3'- gCGAccCC-AGUCCaGAGACCuAGUCC- -5' |
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3588 | 3' | -56.9 | NC_001650.1 | + | 151477 | 0.66 | 0.90857 |
Target: 5'- gGCUccGGuUCAGG-CUCUGGcUCAGGu -3' miRNA: 3'- gCGAccCC-AGUCCaGAGACCuAGUCC- -5' |
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3588 | 3' | -56.9 | NC_001650.1 | + | 151519 | 0.66 | 0.90857 |
Target: 5'- gGCUccGGuUCAGG-CUCUGGcUCAGGu -3' miRNA: 3'- gCGAccCC-AGUCCaGAGACCuAGUCC- -5' |
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3588 | 3' | -56.9 | NC_001650.1 | + | 57550 | 0.66 | 0.919438 |
Target: 5'- gGCUGGGGcugggccUguGGUUgcagcugcggCUGGggCAGGg -3' miRNA: 3'- gCGACCCC-------AguCCAGa---------GACCuaGUCC- -5' |
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3588 | 3' | -56.9 | NC_001650.1 | + | 69413 | 0.66 | 0.919988 |
Target: 5'- aGCUGGGGguugaugaGGGUCa--GGcUCAGGg -3' miRNA: 3'- gCGACCCCag------UCCAGagaCCuAGUCC- -5' |
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3588 | 3' | -56.9 | NC_001650.1 | + | 147617 | 0.66 | 0.919988 |
Target: 5'- cCGCUacaGGGGaaccgcuuUUGGGUCgCUGGcUCGGGg -3' miRNA: 3'- -GCGA---CCCC--------AGUCCAGaGACCuAGUCC- -5' |
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3588 | 3' | -56.9 | NC_001650.1 | + | 171358 | 0.67 | 0.889769 |
Target: 5'- ---aGGGGUCuuuguccgggGGGUCUUUGGGggucCGGGg -3' miRNA: 3'- gcgaCCCCAG----------UCCAGAGACCUa---GUCC- -5' |
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3588 | 3' | -56.9 | NC_001650.1 | + | 4651 | 0.67 | 0.889769 |
Target: 5'- ---aGGGGUCuuuguccgggGGGUCUUUGGGggucCGGGg -3' miRNA: 3'- gcgaCCCCAG----------UCCAGAGACCUa---GUCC- -5' |
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3588 | 3' | -56.9 | NC_001650.1 | + | 106856 | 0.74 | 0.515666 |
Target: 5'- gCGCUGGGGUCGGGcCcggggUGGAUgaCAGGu -3' miRNA: 3'- -GCGACCCCAGUCCaGag---ACCUA--GUCC- -5' |
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3588 | 3' | -56.9 | NC_001650.1 | + | 46458 | 0.74 | 0.515666 |
Target: 5'- cCGC-GGGGcaucccgcuuUCGGGUCUCgGGGUCAGa -3' miRNA: 3'- -GCGaCCCC----------AGUCCAGAGaCCUAGUCc -5' |
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3588 | 3' | -56.9 | NC_001650.1 | + | 151749 | 0.71 | 0.683317 |
Target: 5'- gGCUcGGGUCcuGGUC-CUGGAUCuGGu -3' miRNA: 3'- gCGAcCCCAGu-CCAGaGACCUAGuCC- -5' |
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3588 | 3' | -56.9 | NC_001650.1 | + | 77025 | 0.7 | 0.741573 |
Target: 5'- gGgUGGGGuUCAGGcCgcgCUGGGccUCGGGg -3' miRNA: 3'- gCgACCCC-AGUCCaGa--GACCU--AGUCC- -5' |
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3588 | 3' | -56.9 | NC_001650.1 | + | 87481 | 0.69 | 0.785013 |
Target: 5'- gGgUGGGcGUCAGGUgUUUGGccacguuucucucgGUCAGGu -3' miRNA: 3'- gCgACCC-CAGUCCAgAGACC--------------UAGUCC- -5' |
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3588 | 3' | -56.9 | NC_001650.1 | + | 49573 | 0.68 | 0.830502 |
Target: 5'- uGCacGGGGU--GGUCUCUGuGAUgGGGg -3' miRNA: 3'- gCGa-CCCCAguCCAGAGAC-CUAgUCC- -5' |
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3588 | 3' | -56.9 | NC_001650.1 | + | 88524 | 0.67 | 0.869031 |
Target: 5'- aGCgGGGGcgCcGGUCUCUGGAaaAGa -3' miRNA: 3'- gCGaCCCCa-GuCCAGAGACCUagUCc -5' |
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3588 | 3' | -56.9 | NC_001650.1 | + | 145498 | 0.67 | 0.883067 |
Target: 5'- gGCcgGGGGcUCcuGGUCagCUGGAgcuUCAGGg -3' miRNA: 3'- gCGa-CCCC-AGu-CCAGa-GACCU---AGUCC- -5' |
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3588 | 3' | -56.9 | NC_001650.1 | + | 155454 | 0.66 | 0.919988 |
Target: 5'- uGCUGGGcGUaCGGGaCgcacCUGGGggUCAGGu -3' miRNA: 3'- gCGACCC-CA-GUCCaGa---GACCU--AGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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