Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3589 | 5' | -47.7 | NC_001650.1 | + | 26846 | 0.69 | 0.995042 |
Target: 5'- aCCUGCUGcCcgGggCCGAgAGCCACa -3' miRNA: 3'- -GGACGAUcGuaUuaGGUUaUCGGUGa -5' |
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3589 | 5' | -47.7 | NC_001650.1 | + | 98985 | 0.7 | 0.993283 |
Target: 5'- aCCUggaGCUGGaCGUGAUCCAggAGCaCAUa -3' miRNA: 3'- -GGA---CGAUC-GUAUUAGGUuaUCG-GUGa -5' |
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3589 | 5' | -47.7 | NC_001650.1 | + | 36665 | 0.7 | 0.993283 |
Target: 5'- gCCUGCUGGaCGUGG-CCGGgcgggagGGCUACa -3' miRNA: 3'- -GGACGAUC-GUAUUaGGUUa------UCGGUGa -5' |
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3589 | 5' | -47.7 | NC_001650.1 | + | 180285 | 0.7 | 0.992233 |
Target: 5'- gCCUGUUuuguGCAaacAUCCAuaAGCCACUa -3' miRNA: 3'- -GGACGAu---CGUau-UAGGUuaUCGGUGA- -5' |
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3589 | 5' | -47.7 | NC_001650.1 | + | 13578 | 0.7 | 0.992233 |
Target: 5'- gCCUGUUuuguGCAaacAUCCAuaAGCCACUa -3' miRNA: 3'- -GGACGAu---CGUau-UAGGUuaUCGGUGA- -5' |
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3589 | 5' | -47.7 | NC_001650.1 | + | 111112 | 0.7 | 0.989743 |
Target: 5'- gCCUGCUcGCccccccAUCCAGUcGCCGCg -3' miRNA: 3'- -GGACGAuCGuau---UAGGUUAuCGGUGa -5' |
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3589 | 5' | -47.7 | NC_001650.1 | + | 172196 | 0.71 | 0.98667 |
Target: 5'- aCUGCguaugccaGGCAUgggGAUCCAagAUGGCCGCc -3' miRNA: 3'- gGACGa-------UCGUA---UUAGGU--UAUCGGUGa -5' |
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3589 | 5' | -47.7 | NC_001650.1 | + | 5489 | 0.71 | 0.98667 |
Target: 5'- aCUGCguaugccaGGCAUgggGAUCCAagAUGGCCGCc -3' miRNA: 3'- gGACGa-------UCGUA---UUAGGU--UAUCGGUGa -5' |
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3589 | 5' | -47.7 | NC_001650.1 | + | 131665 | 0.75 | 0.909486 |
Target: 5'- uCCUGCUGGCgcgGUAggcGUCCAGgacgcccugcacgugGGCCGCUa -3' miRNA: 3'- -GGACGAUCG---UAU---UAGGUUa--------------UCGGUGA- -5' |
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3589 | 5' | -47.7 | NC_001650.1 | + | 3466 | 0.77 | 0.849263 |
Target: 5'- gCCUGCcaGGCAUgggGAUCCAagAUGGCCGCc -3' miRNA: 3'- -GGACGa-UCGUA---UUAGGU--UAUCGGUGa -5' |
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3589 | 5' | -47.7 | NC_001650.1 | + | 170173 | 0.77 | 0.849263 |
Target: 5'- gCCUGCcaGGCAUgggGAUCCAagAUGGCCGCc -3' miRNA: 3'- -GGACGa-UCGUA---UUAGGU--UAUCGGUGa -5' |
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3589 | 5' | -47.7 | NC_001650.1 | + | 3397 | 0.77 | 0.813971 |
Target: 5'- gCCUGCcaGGCAUgggGAUCCAagAUGGCCACc -3' miRNA: 3'- -GGACGa-UCGUA---UUAGGU--UAUCGGUGa -5' |
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3589 | 5' | -47.7 | NC_001650.1 | + | 170104 | 0.77 | 0.813971 |
Target: 5'- gCCUGCcaGGCAUgggGAUCCAagAUGGCCACc -3' miRNA: 3'- -GGACGa-UCGUA---UUAGGU--UAUCGGUGa -5' |
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3589 | 5' | -47.7 | NC_001650.1 | + | 179274 | 0.78 | 0.804662 |
Target: 5'- uCCUGUUAGCAUAAcUCAAUGGCUuuGCUc -3' miRNA: 3'- -GGACGAUCGUAUUaGGUUAUCGG--UGA- -5' |
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3589 | 5' | -47.7 | NC_001650.1 | + | 12567 | 0.78 | 0.804662 |
Target: 5'- uCCUGUUAGCAUAAcUCAAUGGCUuuGCUc -3' miRNA: 3'- -GGACGAUCGUAUUaGGUUAUCGG--UGA- -5' |
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3589 | 5' | -47.7 | NC_001650.1 | + | 12240 | 1.1 | 0.016824 |
Target: 5'- uCCUGCUAGCAUAAUCCAAUAGCCACUc -3' miRNA: 3'- -GGACGAUCGUAUUAGGUUAUCGGUGA- -5' |
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3589 | 5' | -47.7 | NC_001650.1 | + | 178947 | 1.1 | 0.016824 |
Target: 5'- uCCUGCUAGCAUAAUCCAAUAGCCACUc -3' miRNA: 3'- -GGACGAUCGUAUUAGGUUAUCGGUGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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