miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3591 5' -54 NC_001650.1 + 53706 0.67 0.952926
Target:  5'- gCUCUcGACcaauCAGAGCgCGGCcgagagGGCUCUg -3'
miRNA:   3'- -GAGA-CUGuu--GUCUUGgGCCG------UCGAGG- -5'
3591 5' -54 NC_001650.1 + 53937 0.67 0.960486
Target:  5'- aUCUGAUuggucCAGAGCCCucucGGCcgcGCUCUg -3'
miRNA:   3'- gAGACUGuu---GUCUUGGG----CCGu--CGAGG- -5'
3591 5' -54 NC_001650.1 + 54407 0.67 0.948803
Target:  5'- -cCUGA--GCcuGGGcgGCCCGGgAGCUCCa -3'
miRNA:   3'- gaGACUguUG--UCU--UGGGCCgUCGAGG- -5'
3591 5' -54 NC_001650.1 + 57813 0.67 0.948803
Target:  5'- gCUCaagGACAucaAGAACUCGcaGCAGUUCCc -3'
miRNA:   3'- -GAGa--CUGUug-UCUUGGGC--CGUCGAGG- -5'
3591 5' -54 NC_001650.1 + 61536 0.74 0.653691
Target:  5'- -gCUGAgGGCGGAGCUgGGCaaccugucccAGCUCCa -3'
miRNA:   3'- gaGACUgUUGUCUUGGgCCG----------UCGAGG- -5'
3591 5' -54 NC_001650.1 + 62866 0.74 0.674103
Target:  5'- ----aGCAGCAGAGCCaGGgGGCUCCg -3'
miRNA:   3'- gagacUGUUGUCUUGGgCCgUCGAGG- -5'
3591 5' -54 NC_001650.1 + 63100 0.7 0.866327
Target:  5'- uCUCUGGgGgucGCGcc-CCCGGguGCUCCg -3'
miRNA:   3'- -GAGACUgU---UGUcuuGGGCCguCGAGG- -5'
3591 5' -54 NC_001650.1 + 65880 0.66 0.970184
Target:  5'- ---aGACAGCuAGAGaCCGGCAGCa-- -3'
miRNA:   3'- gagaCUGUUG-UCUUgGGCCGUCGagg -5'
3591 5' -54 NC_001650.1 + 68952 0.7 0.873713
Target:  5'- -cCUGGCuACcacccuGCCCGGCcuGGCUCCg -3'
miRNA:   3'- gaGACUGuUGucu---UGGGCCG--UCGAGG- -5'
3591 5' -54 NC_001650.1 + 69068 0.69 0.894552
Target:  5'- gUCUGGCGGCcauGGGCCCGggcgcGCGGCacgUCCc -3'
miRNA:   3'- gAGACUGUUGu--CUUGGGC-----CGUCG---AGG- -5'
3591 5' -54 NC_001650.1 + 73545 0.66 0.973
Target:  5'- --aUGGCgAACAGGuCCUGGCAGUggacgcccaugUCCg -3'
miRNA:   3'- gagACUG-UUGUCUuGGGCCGUCG-----------AGG- -5'
3591 5' -54 NC_001650.1 + 75045 0.67 0.948803
Target:  5'- cCUCUGAaacGCAGAgcgggaccGCCUGGCucGCgUCCu -3'
miRNA:   3'- -GAGACUgu-UGUCU--------UGGGCCGu-CG-AGG- -5'
3591 5' -54 NC_001650.1 + 76456 0.67 0.948803
Target:  5'- aUCUGGCAuguaaauGGACUgguaCGGCGGCUCa -3'
miRNA:   3'- gAGACUGUugu----CUUGG----GCCGUCGAGg -5'
3591 5' -54 NC_001650.1 + 78819 0.69 0.894552
Target:  5'- gUCUGccGCAGCGGcGCCCGcaCAGcCUCCa -3'
miRNA:   3'- gAGAC--UGUUGUCuUGGGCc-GUC-GAGG- -5'
3591 5' -54 NC_001650.1 + 79196 0.66 0.975619
Target:  5'- aUCgGGCGcuGgAGGACCCGGgGGCUg- -3'
miRNA:   3'- gAGaCUGU--UgUCUUGGGCCgUCGAgg -5'
3591 5' -54 NC_001650.1 + 80330 0.69 0.880175
Target:  5'- uUCUGAUcuAcuuugggcccuucGCGGAGCCCaGGCGGC-CCu -3'
miRNA:   3'- gAGACUG--U-------------UGUCUUGGG-CCGUCGaGG- -5'
3591 5' -54 NC_001650.1 + 81528 0.66 0.975619
Target:  5'- uCUUUGACAu--GGGCCgggaGGC-GCUCCa -3'
miRNA:   3'- -GAGACUGUuguCUUGGg---CCGuCGAGG- -5'
3591 5' -54 NC_001650.1 + 82743 0.71 0.826354
Target:  5'- ---gGGCAGCAGcagggGGCCCGGguGC-CCg -3'
miRNA:   3'- gagaCUGUUGUC-----UUGGGCCguCGaGG- -5'
3591 5' -54 NC_001650.1 + 85180 0.68 0.91911
Target:  5'- gUCaGGCAGCAGAACuCCaGCaagaAGCUCUu -3'
miRNA:   3'- gAGaCUGUUGUCUUG-GGcCG----UCGAGG- -5'
3591 5' -54 NC_001650.1 + 89124 0.73 0.728326
Target:  5'- -cCUGGcCAGCAGGGCCCugaagaacucgggcaGGCAGCaguUCCa -3'
miRNA:   3'- gaGACU-GUUGUCUUGGG---------------CCGUCG---AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.