miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3591 5' -54 NC_001650.1 + 3045 0.71 0.826354
Target:  5'- -cCUGGCAACAGcugacgucgccgGGCCCGGaGGcCUCCc -3'
miRNA:   3'- gaGACUGUUGUC------------UUGGGCCgUC-GAGG- -5'
3591 5' -54 NC_001650.1 + 3126 0.72 0.734228
Target:  5'- -cCUGGCAACAGAugacGCagaCGGCcacccGGCUCCc -3'
miRNA:   3'- gaGACUGUUGUCU----UGg--GCCG-----UCGAGG- -5'
3591 5' -54 NC_001650.1 + 4218 0.68 0.929963
Target:  5'- uUCUGGCcaAugGGGACUCuguccgugGGCgAGCUCCg -3'
miRNA:   3'- gAGACUG--UugUCUUGGG--------CCG-UCGAGG- -5'
3591 5' -54 NC_001650.1 + 13844 0.67 0.960486
Target:  5'- gUCUGGCAGCGu--CCCccucagcaGGCAGCgCCu -3'
miRNA:   3'- gAGACUGUUGUcuuGGG--------CCGUCGaGG- -5'
3591 5' -54 NC_001650.1 + 14047 1.11 0.003919
Target:  5'- gCUCUGACAACAGAACCCGGCAGCUCCc -3'
miRNA:   3'- -GAGACUGUUGUCUUGGGCCGUCGAGG- -5'
3591 5' -54 NC_001650.1 + 14644 0.68 0.935029
Target:  5'- uUCUcACAGUGGAACCCGGgCGGCcggCCu -3'
miRNA:   3'- gAGAcUGUUGUCUUGGGCC-GUCGa--GG- -5'
3591 5' -54 NC_001650.1 + 14980 0.66 0.967163
Target:  5'- -cCUGGCAACGcgcGGCCCGcGCGacGCUUCa -3'
miRNA:   3'- gaGACUGUUGUc--UUGGGC-CGU--CGAGG- -5'
3591 5' -54 NC_001650.1 + 18497 0.66 0.973
Target:  5'- -aCUGGCAACAGAuCCUuuGGaaggGGUUCCc -3'
miRNA:   3'- gaGACUGUUGUCUuGGG--CCg---UCGAGG- -5'
3591 5' -54 NC_001650.1 + 19476 0.68 0.924656
Target:  5'- aCUCUGACuccugagagGACAGAgGCCCGGUugucugggagAGCUg- -3'
miRNA:   3'- -GAGACUG---------UUGUCU-UGGGCCG----------UCGAgg -5'
3591 5' -54 NC_001650.1 + 22659 0.68 0.91911
Target:  5'- cCUCgcACGACAGcGgCCGGCGGCUggCCu -3'
miRNA:   3'- -GAGacUGUUGUCuUgGGCCGUCGA--GG- -5'
3591 5' -54 NC_001650.1 + 23224 0.7 0.873713
Target:  5'- -cCUGGCGaggugcccgaGCAGGcugACCCGGCAGC-Cg -3'
miRNA:   3'- gaGACUGU----------UGUCU---UGGGCCGUCGaGg -5'
3591 5' -54 NC_001650.1 + 25131 0.76 0.551848
Target:  5'- gCUCccggGACGGCAGAcACCUGGUccuGCUCCa -3'
miRNA:   3'- -GAGa---CUGUUGUCU-UGGGCCGu--CGAGG- -5'
3591 5' -54 NC_001650.1 + 26230 0.67 0.956819
Target:  5'- uUUUGACucuccacAUAGAACuuGGCuAGCUCg -3'
miRNA:   3'- gAGACUGu------UGUCUUGggCCG-UCGAGg -5'
3591 5' -54 NC_001650.1 + 26462 0.68 0.929963
Target:  5'- ---aGGcCAGCGuGGGCCCGuGCGGCUUCg -3'
miRNA:   3'- gagaCU-GUUGU-CUUGGGC-CGUCGAGG- -5'
3591 5' -54 NC_001650.1 + 28004 0.67 0.952926
Target:  5'- -gCUGGCcgGGCAgGAGCCgCGGCAcaGCUCg -3'
miRNA:   3'- gaGACUG--UUGU-CUUGG-GCCGU--CGAGg -5'
3591 5' -54 NC_001650.1 + 28500 0.66 0.975619
Target:  5'- uCUUUGACGu--GGACUCGGCcGC-CCg -3'
miRNA:   3'- -GAGACUGUuguCUUGGGCCGuCGaGG- -5'
3591 5' -54 NC_001650.1 + 34684 0.69 0.901043
Target:  5'- uUCUGACAcCGGGugcgcGCCCGGCuccugGGCcgCCc -3'
miRNA:   3'- gAGACUGUuGUCU-----UGGGCCG-----UCGa-GG- -5'
3591 5' -54 NC_001650.1 + 37525 0.67 0.947521
Target:  5'- gCUCUGgGCggUAGc-CCCGGCAGUggauaaacagggagUCCg -3'
miRNA:   3'- -GAGAC-UGuuGUCuuGGGCCGUCG--------------AGG- -5'
3591 5' -54 NC_001650.1 + 41615 0.67 0.960486
Target:  5'- ---gGuuuCAGgGGGGCCCGcGUGGCUCCa -3'
miRNA:   3'- gagaCu--GUUgUCUUGGGC-CGUCGAGG- -5'
3591 5' -54 NC_001650.1 + 53189 0.69 0.88783
Target:  5'- cCUCggGAC--CGGAGCCCGGCucGCgUCCc -3'
miRNA:   3'- -GAGa-CUGuuGUCUUGGGCCGu-CG-AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.