miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3591 5' -54 NC_001650.1 + 180754 1.11 0.003919
Target:  5'- gCUCUGACAACAGAACCCGGCAGCUCCc -3'
miRNA:   3'- -GAGACUGUUGUCUUGGGCCGUCGAGG- -5'
3591 5' -54 NC_001650.1 + 14047 1.11 0.003919
Target:  5'- gCUCUGACAACAGAACCCGGCAGCUCCc -3'
miRNA:   3'- -GAGACUGUUGUCUUGGGCCGUCGAGG- -5'
3591 5' -54 NC_001650.1 + 25131 0.76 0.551848
Target:  5'- gCUCccggGACGGCAGAcACCUGGUccuGCUCCa -3'
miRNA:   3'- -GAGa---CUGUUGUCU-UGGGCCGu--CGAGG- -5'
3591 5' -54 NC_001650.1 + 158915 0.75 0.571988
Target:  5'- uUCgUGGCGAUAGGggauGCCCGGCAGCagcugggugacaUCCg -3'
miRNA:   3'- gAG-ACUGUUGUCU----UGGGCCGUCG------------AGG- -5'
3591 5' -54 NC_001650.1 + 138050 0.75 0.571988
Target:  5'- -aCUGGaucaucucaGACAGGGCCUGGCAGC-CCa -3'
miRNA:   3'- gaGACUg--------UUGUCUUGGGCCGUCGaGG- -5'
3591 5' -54 NC_001650.1 + 152733 0.75 0.592298
Target:  5'- aCUCUGAaaaGAgGGGACCUGGCAGg-CCa -3'
miRNA:   3'- -GAGACUg--UUgUCUUGGGCCGUCgaGG- -5'
3591 5' -54 NC_001650.1 + 61536 0.74 0.653691
Target:  5'- -gCUGAgGGCGGAGCUgGGCaaccugucccAGCUCCa -3'
miRNA:   3'- gaGACUgUUGUCUUGGgCCG----------UCGAGG- -5'
3591 5' -54 NC_001650.1 + 107190 0.74 0.66391
Target:  5'- -gCUGACAAUAGA--UUGGCAGCUCUc -3'
miRNA:   3'- gaGACUGUUGUCUugGGCCGUCGAGG- -5'
3591 5' -54 NC_001650.1 + 62866 0.74 0.674103
Target:  5'- ----aGCAGCAGAGCCaGGgGGCUCCg -3'
miRNA:   3'- gagacUGUUGUCUUGGgCCgUCGAGG- -5'
3591 5' -54 NC_001650.1 + 89124 0.73 0.728326
Target:  5'- -cCUGGcCAGCAGGGCCCugaagaacucgggcaGGCAGCaguUCCa -3'
miRNA:   3'- gaGACU-GUUGUCUUGGG---------------CCGUCG---AGG- -5'
3591 5' -54 NC_001650.1 + 169833 0.72 0.734228
Target:  5'- -cCUGGCAACAGAugacGCagaCGGCcacccGGCUCCc -3'
miRNA:   3'- gaGACUGUUGUCU----UGg--GCCG-----UCGAGG- -5'
3591 5' -54 NC_001650.1 + 3126 0.72 0.734228
Target:  5'- -cCUGGCAACAGAugacGCagaCGGCcacccGGCUCCc -3'
miRNA:   3'- gaGACUGUUGUCU----UGg--GCCG-----UCGAGG- -5'
3591 5' -54 NC_001650.1 + 89159 0.72 0.743019
Target:  5'- -cCUGGCgGACAGGguccuguGCCCGG-GGCUCCg -3'
miRNA:   3'- gaGACUG-UUGUCU-------UGGGCCgUCGAGG- -5'
3591 5' -54 NC_001650.1 + 127477 0.72 0.781972
Target:  5'- uUCUGAgu-CAGAugcgguCCCGGCgcGGCUCCu -3'
miRNA:   3'- gAGACUguuGUCUu-----GGGCCG--UCGAGG- -5'
3591 5' -54 NC_001650.1 + 145739 0.71 0.791153
Target:  5'- ---gGGCGGCAGGGCCauggcgGGCAGgUCCg -3'
miRNA:   3'- gagaCUGUUGUCUUGGg-----CCGUCgAGG- -5'
3591 5' -54 NC_001650.1 + 140254 0.71 0.8178
Target:  5'- -cCUGGgcuCAGCccGGCCCGGgAGCUCCa -3'
miRNA:   3'- gaGACU---GUUGucUUGGGCCgUCGAGG- -5'
3591 5' -54 NC_001650.1 + 127347 0.71 0.8178
Target:  5'- uUCgcaGGCucCGGGGCCCGGUGGuCUCCc -3'
miRNA:   3'- gAGa--CUGuuGUCUUGGGCCGUC-GAGG- -5'
3591 5' -54 NC_001650.1 + 169752 0.71 0.826354
Target:  5'- -cCUGGCAACAGcugacgucgccgGGCCCGGaGGcCUCCc -3'
miRNA:   3'- gaGACUGUUGUC------------UUGGGCCgUC-GAGG- -5'
3591 5' -54 NC_001650.1 + 3045 0.71 0.826354
Target:  5'- -cCUGGCAACAGcugacgucgccgGGCCCGGaGGcCUCCc -3'
miRNA:   3'- gaGACUGUUGUC------------UUGGGCCgUC-GAGG- -5'
3591 5' -54 NC_001650.1 + 135294 0.71 0.826354
Target:  5'- cCUCcu-CAGCAGAACCUGGguGCagucgUCCc -3'
miRNA:   3'- -GAGacuGUUGUCUUGGGCCguCG-----AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.