Results 1 - 20 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3591 | 5' | -54 | NC_001650.1 | + | 26462 | 0.68 | 0.929963 |
Target: 5'- ---aGGcCAGCGuGGGCCCGuGCGGCUUCg -3' miRNA: 3'- gagaCU-GUUGU-CUUGGGC-CGUCGAGG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 169752 | 0.71 | 0.826354 |
Target: 5'- -cCUGGCAACAGcugacgucgccgGGCCCGGaGGcCUCCc -3' miRNA: 3'- gaGACUGUUGUC------------UUGGGCCgUC-GAGG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 68952 | 0.7 | 0.873713 |
Target: 5'- -cCUGGCuACcacccuGCCCGGCcuGGCUCCg -3' miRNA: 3'- gaGACUGuUGucu---UGGGCCG--UCGAGG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 80330 | 0.69 | 0.880175 |
Target: 5'- uUCUGAUcuAcuuugggcccuucGCGGAGCCCaGGCGGC-CCu -3' miRNA: 3'- gAGACUG--U-------------UGUCUUGGG-CCGUCGaGG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 118228 | 0.69 | 0.880882 |
Target: 5'- gCUCUGGCAGCgcucGGggUUCucgGGCAGCUUg -3' miRNA: 3'- -GAGACUGUUG----UCuuGGG---CCGUCGAGg -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 53189 | 0.69 | 0.88783 |
Target: 5'- cCUCggGAC--CGGAGCCCGGCucGCgUCCc -3' miRNA: 3'- -GAGa-CUGuuGUCUUGGGCCGu-CG-AGG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 22659 | 0.68 | 0.91911 |
Target: 5'- cCUCgcACGACAGcGgCCGGCGGCUggCCu -3' miRNA: 3'- -GAGacUGUUGUCuUgGGCCGUCGA--GG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 85180 | 0.68 | 0.91911 |
Target: 5'- gUCaGGCAGCAGAACuCCaGCaagaAGCUCUu -3' miRNA: 3'- gAGaCUGUUGUCUUG-GGcCG----UCGAGG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 92926 | 0.68 | 0.924656 |
Target: 5'- ---aGugGGCAGGAUCCGGgGGCUg- -3' miRNA: 3'- gagaCugUUGUCUUGGGCCgUCGAgg -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 3045 | 0.71 | 0.826354 |
Target: 5'- -cCUGGCAACAGcugacgucgccgGGCCCGGaGGcCUCCc -3' miRNA: 3'- gaGACUGUUGUC------------UUGGGCCgUC-GAGG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 135294 | 0.71 | 0.826354 |
Target: 5'- cCUCcu-CAGCAGAACCUGGguGCagucgUCCc -3' miRNA: 3'- -GAGacuGUUGUCUUGGGCCguCG-----AGG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 140254 | 0.71 | 0.8178 |
Target: 5'- -cCUGGgcuCAGCccGGCCCGGgAGCUCCa -3' miRNA: 3'- gaGACU---GUUGucUUGGGCCgUCGAGG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 138050 | 0.75 | 0.571988 |
Target: 5'- -aCUGGaucaucucaGACAGGGCCUGGCAGC-CCa -3' miRNA: 3'- gaGACUg--------UUGUCUUGGGCCGUCGaGG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 158915 | 0.75 | 0.571988 |
Target: 5'- uUCgUGGCGAUAGGggauGCCCGGCAGCagcugggugacaUCCg -3' miRNA: 3'- gAG-ACUGUUGUCU----UGGGCCGUCG------------AGG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 107190 | 0.74 | 0.66391 |
Target: 5'- -gCUGACAAUAGA--UUGGCAGCUCUc -3' miRNA: 3'- gaGACUGUUGUCUugGGCCGUCGAGG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 62866 | 0.74 | 0.674103 |
Target: 5'- ----aGCAGCAGAGCCaGGgGGCUCCg -3' miRNA: 3'- gagacUGUUGUCUUGGgCCgUCGAGG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 3126 | 0.72 | 0.734228 |
Target: 5'- -cCUGGCAACAGAugacGCagaCGGCcacccGGCUCCc -3' miRNA: 3'- gaGACUGUUGUCU----UGg--GCCG-----UCGAGG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 169833 | 0.72 | 0.734228 |
Target: 5'- -cCUGGCAACAGAugacGCagaCGGCcacccGGCUCCc -3' miRNA: 3'- gaGACUGUUGUCU----UGg--GCCG-----UCGAGG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 89159 | 0.72 | 0.743019 |
Target: 5'- -cCUGGCgGACAGGguccuguGCCCGG-GGCUCCg -3' miRNA: 3'- gaGACUG-UUGUCU-------UGGGCCgUCGAGG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 145739 | 0.71 | 0.791153 |
Target: 5'- ---gGGCGGCAGGGCCauggcgGGCAGgUCCg -3' miRNA: 3'- gagaCUGUUGUCUUGGg-----CCGUCgAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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