miRNA display CGI


Results 41 - 60 of 203 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3592 5' -56.7 NC_001650.1 + 88020 0.66 0.893868
Target:  5'- gGGUgCUgGCucuCUGCcAUCACUCACCCACa -3'
miRNA:   3'- -CCA-GA-CGu--GGUGuUGGUGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 112651 0.67 0.863818
Target:  5'- --aUUGCcCCACcuGACCACCCaugaccccccaacaACCCACu -3'
miRNA:   3'- ccaGACGuGGUG--UUGGUGGG--------------UGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 182232 0.67 0.866041
Target:  5'- -cUCUGCcCCccguGCAGCCGCCCcucUCCACc -3'
miRNA:   3'- ccAGACGuGG----UGUUGGUGGGu--GGGUG- -5'
3592 5' -56.7 NC_001650.1 + 15525 0.67 0.866041
Target:  5'- -cUCUGCcCCccguGCAGCCGCCCcucUCCACc -3'
miRNA:   3'- ccAGACGuGG----UGUUGGUGGGu--GGGUG- -5'
3592 5' -56.7 NC_001650.1 + 133112 0.67 0.873317
Target:  5'- aGUCUcgcggagcggGCGCCACcGCCuccaccaccuCCCGCUCGCg -3'
miRNA:   3'- cCAGA----------CGUGGUGuUGGu---------GGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 155952 0.67 0.873317
Target:  5'- cGG-CUGCACCG-AGCC-CCUGgCCGCg -3'
miRNA:   3'- -CCaGACGUGGUgUUGGuGGGUgGGUG- -5'
3592 5' -56.7 NC_001650.1 + 8463 0.67 0.866041
Target:  5'- ---aUGgACCACccacacuuauCCACCCACCCAUc -3'
miRNA:   3'- ccagACgUGGUGuu--------GGUGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 11794 0.67 0.873317
Target:  5'- ---gUGC-CCACAACCcCCCaugaucacagACCCACa -3'
miRNA:   3'- ccagACGuGGUGUUGGuGGG----------UGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 1712 0.67 0.873317
Target:  5'- --cCUGCcUgGCAACCGCCUACCuCAUc -3'
miRNA:   3'- ccaGACGuGgUGUUGGUGGGUGG-GUG- -5'
3592 5' -56.7 NC_001650.1 + 30475 0.67 0.880383
Target:  5'- gGGUCU-CGCC-CAu---CCCGCCCGCg -3'
miRNA:   3'- -CCAGAcGUGGuGUugguGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 172067 0.67 0.873317
Target:  5'- uGUCUGUGCCGCGgcgGCCAUCUugUCu- -3'
miRNA:   3'- cCAGACGUGGUGU---UGGUGGGugGGug -5'
3592 5' -56.7 NC_001650.1 + 168419 0.67 0.873317
Target:  5'- --cCUGCcUgGCAACCGCCUACCuCAUc -3'
miRNA:   3'- ccaGACGuGgUGUUGGUGGGUGG-GUG- -5'
3592 5' -56.7 NC_001650.1 + 178501 0.67 0.873317
Target:  5'- ---gUGC-CCACAACCcCCCaugaucacagACCCACa -3'
miRNA:   3'- ccagACGuGGUGUUGGuGGG----------UGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 175170 0.67 0.866041
Target:  5'- ---aUGgACCACccacacuuauCCACCCACCCAUc -3'
miRNA:   3'- ccagACgUGGUGuu--------GGUGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 111272 0.67 0.866041
Target:  5'- gGGcCUcGC-CCGCAGCaguGCCCGCCC-Ca -3'
miRNA:   3'- -CCaGA-CGuGGUGUUGg--UGGGUGGGuG- -5'
3592 5' -56.7 NC_001650.1 + 66039 0.67 0.866041
Target:  5'- -cUUUGacaACCAgAACCugCaCACCCACu -3'
miRNA:   3'- ccAGACg--UGGUgUUGGugG-GUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 72678 0.67 0.855513
Target:  5'- gGGUCaagacGCGCCGgGACCcugggcaggcgguCgCCACCCACg -3'
miRNA:   3'- -CCAGa----CGUGGUgUUGGu------------G-GGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 170950 0.67 0.850883
Target:  5'- uGGUCaUGCgaugACCGCGagguACCcUCCACCCAg -3'
miRNA:   3'- -CCAG-ACG----UGGUGU----UGGuGGGUGGGUg -5'
3592 5' -56.7 NC_001650.1 + 131890 0.67 0.858561
Target:  5'- cGGUCcugaGCACCuCcACCGCCC-CCCuCa -3'
miRNA:   3'- -CCAGa---CGUGGuGuUGGUGGGuGGGuG- -5'
3592 5' -56.7 NC_001650.1 + 5360 0.67 0.873317
Target:  5'- uGUCUGUGCCGCGgcgGCCAUCUugUCu- -3'
miRNA:   3'- cCAGACGUGGUGU---UGGUGGGugGGug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.