miRNA display CGI


Results 21 - 40 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3592 5' -56.7 NC_001650.1 + 135608 0.66 0.90028
Target:  5'- cGG-CgcaCACCACAGCUAgCCuggcGCCCGCg -3'
miRNA:   3'- -CCaGac-GUGGUGUUGGUgGG----UGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 71335 0.66 0.90028
Target:  5'- --cCUGCGCCcuCAggucccucuGCCACCCAaaggUCCACa -3'
miRNA:   3'- ccaGACGUGGu-GU---------UGGUGGGU----GGGUG- -5'
3592 5' -56.7 NC_001650.1 + 179992 0.66 0.918153
Target:  5'- aGGUg-GUggaGCCACAGagagaCACCCACCCu- -3'
miRNA:   3'- -CCAgaCG---UGGUGUUg----GUGGGUGGGug -5'
3592 5' -56.7 NC_001650.1 + 118264 0.66 0.912424
Target:  5'- ---gUGCGCCACGGgcuguacucguCCAgCCUGCCCGCc -3'
miRNA:   3'- ccagACGUGGUGUU-----------GGU-GGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 171394 0.66 0.91759
Target:  5'- gGGUCUuaAagacccuCUAgGACCACCCugCCAg -3'
miRNA:   3'- -CCAGAcgU-------GGUgUUGGUGGGugGGUg -5'
3592 5' -56.7 NC_001650.1 + 89294 0.66 0.912424
Target:  5'- cGGUCgucccccGCGacgagccaguCCGCggUCACCCGCCuCAUg -3'
miRNA:   3'- -CCAGa------CGU----------GGUGuuGGUGGGUGG-GUG- -5'
3592 5' -56.7 NC_001650.1 + 50490 0.66 0.918153
Target:  5'- cGUCUcCcCCGCcGCCGCCCGCUCcCg -3'
miRNA:   3'- cCAGAcGuGGUGuUGGUGGGUGGGuG- -5'
3592 5' -56.7 NC_001650.1 + 18288 0.66 0.906466
Target:  5'- aGGUUagaGCcCC-CAGagugaCACCCGCCCACu -3'
miRNA:   3'- -CCAGa--CGuGGuGUUg----GUGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 13285 0.66 0.918153
Target:  5'- aGGUg-GUggaGCCACAGagagaCACCCACCCu- -3'
miRNA:   3'- -CCAgaCG---UGGUGUUg----GUGGGUGGGug -5'
3592 5' -56.7 NC_001650.1 + 165750 0.66 0.912424
Target:  5'- ----aGUGCUGCAGCUGCCCGCUCAa -3'
miRNA:   3'- ccagaCGUGGUGUUGGUGGGUGGGUg -5'
3592 5' -56.7 NC_001650.1 + 88020 0.66 0.893868
Target:  5'- gGGUgCUgGCucuCUGCcAUCACUCACCCACa -3'
miRNA:   3'- -CCA-GA-CGu--GGUGuUGGUGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 136150 0.66 0.893868
Target:  5'- uGGcCaUGCGCCugAAggCGCCC-CCCGCg -3'
miRNA:   3'- -CCaG-ACGUGGugUUg-GUGGGuGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 116252 0.66 0.90028
Target:  5'- uGGUCUugGCCuCGGaCACCCGCCCGu -3'
miRNA:   3'- -CCAGAcgUGGuGUUgGUGGGUGGGUg -5'
3592 5' -56.7 NC_001650.1 + 121492 0.66 0.899015
Target:  5'- --cCUGCGCCgcuGCAGCCccaccagcaucuCCCACCgGCu -3'
miRNA:   3'- ccaGACGUGG---UGUUGGu-----------GGGUGGgUG- -5'
3592 5' -56.7 NC_001650.1 + 36551 0.66 0.90028
Target:  5'- uGUCUauggGCACCACcccGGCCACCUugaccuuggACaCCGCg -3'
miRNA:   3'- cCAGA----CGUGGUG---UUGGUGGG---------UG-GGUG- -5'
3592 5' -56.7 NC_001650.1 + 127965 0.66 0.893868
Target:  5'- aGGUgcCUGCccGCCAUcuaCACCCagACCCGCg -3'
miRNA:   3'- -CCA--GACG--UGGUGuugGUGGG--UGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 176994 0.66 0.906466
Target:  5'- --cCUGUACCACuuCUuCCaCACCUACg -3'
miRNA:   3'- ccaGACGUGGUGuuGGuGG-GUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 100571 0.66 0.906466
Target:  5'- cGUC-GCACCcgcCGGCCGCgucccUCACCCGCc -3'
miRNA:   3'- cCAGaCGUGGu--GUUGGUG-----GGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 75966 0.66 0.912424
Target:  5'- --cCUG-ACCGCAgagaugACCACCuCACCUACc -3'
miRNA:   3'- ccaGACgUGGUGU------UGGUGG-GUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 33975 0.66 0.90028
Target:  5'- uGUCaGUACCcuCAACCugacugacauACCCACCCuACa -3'
miRNA:   3'- cCAGaCGUGGu-GUUGG----------UGGGUGGG-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.