miRNA display CGI


Results 21 - 40 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3592 5' -56.7 NC_001650.1 + 14252 0.7 0.697109
Target:  5'- --cCUGC-CCACAuggACC-CCUGCCCACa -3'
miRNA:   3'- ccaGACGuGGUGU---UGGuGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 14284 0.7 0.697109
Target:  5'- --cCUGC-CCACAuggACC-CCUGCCCACa -3'
miRNA:   3'- ccaGACGuGGUGU---UGGuGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 15525 0.67 0.866041
Target:  5'- -cUCUGCcCCccguGCAGCCGCCCcucUCCACc -3'
miRNA:   3'- ccAGACGuGG----UGUUGGUGGGu--GGGUG- -5'
3592 5' -56.7 NC_001650.1 + 15804 1.1 0.002439
Target:  5'- gGGUCUGCACCACAACCACCCACCCACc -3'
miRNA:   3'- -CCAGACGUGGUGUUGGUGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 15845 0.73 0.537194
Target:  5'- aGGUUgugGcCACC-CAcCCACCUACCCACc -3'
miRNA:   3'- -CCAGa--C-GUGGuGUuGGUGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 15989 0.69 0.773975
Target:  5'- --cCUG-GCUACAuGCCuACCCGCCCACa -3'
miRNA:   3'- ccaGACgUGGUGU-UGG-UGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 16156 0.77 0.3509
Target:  5'- aGGcCUGC-CCACuGACCucaugugGCCCACCCACu -3'
miRNA:   3'- -CCaGACGuGGUG-UUGG-------UGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 16252 0.73 0.575711
Target:  5'- uGGcCUGC-CCACuGACCucaugugGCCCGCCCAUu -3'
miRNA:   3'- -CCaGACGuGGUG-UUGG-------UGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 18288 0.66 0.906466
Target:  5'- aGGUUagaGCcCC-CAGagugaCACCCGCCCACu -3'
miRNA:   3'- -CCAGa--CGuGGuGUUg----GUGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 21746 0.71 0.687171
Target:  5'- gGGUC--CACCGCAGCCgcgGCCCuCCCAg -3'
miRNA:   3'- -CCAGacGUGGUGUUGG---UGGGuGGGUg -5'
3592 5' -56.7 NC_001650.1 + 22895 0.67 0.880383
Target:  5'- aGGUCUGgACgGCcgccaggauggaGGCCAgCCGCCgGCc -3'
miRNA:   3'- -CCAGACgUGgUG------------UUGGUgGGUGGgUG- -5'
3592 5' -56.7 NC_001650.1 + 22931 0.69 0.783122
Target:  5'- uGGaCaGCACCGC--CCuCCCGCCCGCc -3'
miRNA:   3'- -CCaGaCGUGGUGuuGGuGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 23522 0.68 0.809742
Target:  5'- --aCUGCugCGCGACCcuGCCCGaggcgcaccugUCCACg -3'
miRNA:   3'- ccaGACGugGUGUUGG--UGGGU-----------GGGUG- -5'
3592 5' -56.7 NC_001650.1 + 25673 0.75 0.440659
Target:  5'- gGGUCUGgagagcagcggcccCACCACAACCACCUugCUu- -3'
miRNA:   3'- -CCAGAC--------------GUGGUGUUGGUGGGugGGug -5'
3592 5' -56.7 NC_001650.1 + 27761 0.73 0.576708
Target:  5'- cGUggGCACCGCGGCCAacaCGCCCAUg -3'
miRNA:   3'- cCAgaCGUGGUGUUGGUgg-GUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 27794 0.68 0.843012
Target:  5'- --gCUGUGCCGCGGCUccuGCCCGgCCAg -3'
miRNA:   3'- ccaGACGUGGUGUUGG---UGGGUgGGUg -5'
3592 5' -56.7 NC_001650.1 + 29268 0.68 0.801014
Target:  5'- aGGUaCUcCcCCACGucgGCCACCC-CCCGCg -3'
miRNA:   3'- -CCA-GAcGuGGUGU---UGGUGGGuGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 30475 0.67 0.880383
Target:  5'- gGGUCU-CGCC-CAu---CCCGCCCGCg -3'
miRNA:   3'- -CCAGAcGUGGuGUugguGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 30934 0.68 0.843012
Target:  5'- gGGUCgugGCACCgcccgcGCGACguCCUccuCCCACa -3'
miRNA:   3'- -CCAGa--CGUGG------UGUUGguGGGu--GGGUG- -5'
3592 5' -56.7 NC_001650.1 + 31008 0.76 0.38341
Target:  5'- cGGUCaGCACgCGCAgcGCCGCCCcguccCCCGCg -3'
miRNA:   3'- -CCAGaCGUG-GUGU--UGGUGGGu----GGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.