miRNA display CGI


Results 1 - 20 of 203 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3592 5' -56.7 NC_001650.1 + 406 0.7 0.726571
Target:  5'- aGGUCagucgccccuUGCACaacacccCAGCCAcucccCCCGCCCACg -3'
miRNA:   3'- -CCAG----------ACGUGgu-----GUUGGU-----GGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 848 0.72 0.626906
Target:  5'- gGGUCUGCcugGCaACAGCCuaccucACUCACCCAUa -3'
miRNA:   3'- -CCAGACG---UGgUGUUGG------UGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 1227 0.74 0.479854
Target:  5'- -aUCUGCcUgGCAACCGCCUACCuCACa -3'
miRNA:   3'- ccAGACGuGgUGUUGGUGGGUGG-GUG- -5'
3592 5' -56.7 NC_001650.1 + 1712 0.67 0.873317
Target:  5'- --cCUGCcUgGCAACCGCCUACCuCAUc -3'
miRNA:   3'- ccaGACGuGgUGUUGGUGGGUGG-GUG- -5'
3592 5' -56.7 NC_001650.1 + 2426 0.77 0.367304
Target:  5'- -aUCUGCcCgGCAACCGCCUACCuCACa -3'
miRNA:   3'- ccAGACGuGgUGUUGGUGGGUGG-GUG- -5'
3592 5' -56.7 NC_001650.1 + 2570 0.73 0.527456
Target:  5'- -aUCUGCcCgGCAACCGCCUACCuCAUa -3'
miRNA:   3'- ccAGACGuGgUGUUGGUGGGUGG-GUG- -5'
3592 5' -56.7 NC_001650.1 + 3983 0.7 0.716818
Target:  5'- gGGUg-GCGCCGgGGCggaGCUCGCCCACg -3'
miRNA:   3'- -CCAgaCGUGGUgUUGg--UGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 4243 0.67 0.850883
Target:  5'- uGGUCaUGCgaugACCGCGagguACCcUCCACCCAg -3'
miRNA:   3'- -CCAG-ACG----UGGUGU----UGGuGGGUGGGUg -5'
3592 5' -56.7 NC_001650.1 + 4687 0.66 0.91759
Target:  5'- gGGUCUuaAagacccuCUAgGACCACCCugCCAg -3'
miRNA:   3'- -CCAGAcgU-------GGUgUUGGUGGGugGGUg -5'
3592 5' -56.7 NC_001650.1 + 5360 0.67 0.873317
Target:  5'- uGUCUGUGCCGCGgcgGCCAUCUugUCu- -3'
miRNA:   3'- cCAGACGUGGUGU---UGGUGGGugGGug -5'
3592 5' -56.7 NC_001650.1 + 6022 0.66 0.906466
Target:  5'- gGGcCUGC-CCACu-CUACCCuaagGCCCAa -3'
miRNA:   3'- -CCaGACGuGGUGuuGGUGGG----UGGGUg -5'
3592 5' -56.7 NC_001650.1 + 7812 0.73 0.566757
Target:  5'- aGUCUGC-CCAgCAACCugUCACUCAUu -3'
miRNA:   3'- cCAGACGuGGU-GUUGGugGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 8007 0.66 0.905857
Target:  5'- uGGUCUGCcUgGCAACCAgagagacCCCACUgGg -3'
miRNA:   3'- -CCAGACGuGgUGUUGGU-------GGGUGGgUg -5'
3592 5' -56.7 NC_001650.1 + 8463 0.67 0.866041
Target:  5'- ---aUGgACCACccacacuuauCCACCCACCCAUc -3'
miRNA:   3'- ccagACgUGGUGuu--------GGUGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 10287 0.66 0.906466
Target:  5'- --cCUGUACCACuuCUuCCaCACCUACg -3'
miRNA:   3'- ccaGACGUGGUGuuGGuGG-GUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 11423 0.73 0.537194
Target:  5'- -cUCU-CGCCGCGcGCCACCCAgCCCACc -3'
miRNA:   3'- ccAGAcGUGGUGU-UGGUGGGU-GGGUG- -5'
3592 5' -56.7 NC_001650.1 + 11753 0.66 0.912424
Target:  5'- --cCU-CACCGCGACCACCgGgaccCCCAUg -3'
miRNA:   3'- ccaGAcGUGGUGUUGGUGGgU----GGGUG- -5'
3592 5' -56.7 NC_001650.1 + 11794 0.67 0.873317
Target:  5'- ---gUGC-CCACAACCcCCCaugaucacagACCCACa -3'
miRNA:   3'- ccagACGuGGUGUUGGuGGG----------UGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 13285 0.66 0.918153
Target:  5'- aGGUg-GUggaGCCACAGagagaCACCCACCCu- -3'
miRNA:   3'- -CCAgaCG---UGGUGUUg----GUGGGUGGGug -5'
3592 5' -56.7 NC_001650.1 + 14009 0.74 0.489214
Target:  5'- --cCUGC-CCGC--CCGCCCGCCCACc -3'
miRNA:   3'- ccaGACGuGGUGuuGGUGGGUGGGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.