miRNA display CGI


Results 1 - 20 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3592 5' -56.7 NC_001650.1 + 182959 0.73 0.575711
Target:  5'- uGGcCUGC-CCACuGACCucaugugGCCCGCCCAUu -3'
miRNA:   3'- -CCaGACGuGGUG-UUGG-------UGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 182863 0.77 0.3509
Target:  5'- aGGcCUGC-CCACuGACCucaugugGCCCACCCACu -3'
miRNA:   3'- -CCaGACGuGGUG-UUGG-------UGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 182696 0.69 0.773975
Target:  5'- --cCUG-GCUACAuGCCuACCCGCCCACa -3'
miRNA:   3'- ccaGACgUGGUGU-UGG-UGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 182552 0.73 0.537194
Target:  5'- aGGUUgugGcCACC-CAcCCACCUACCCACc -3'
miRNA:   3'- -CCAGa--C-GUGGuGUuGGUGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 182511 1.1 0.002439
Target:  5'- gGGUCUGCACCACAACCACCCACCCACc -3'
miRNA:   3'- -CCAGACGUGGUGUUGGUGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 182232 0.67 0.866041
Target:  5'- -cUCUGCcCCccguGCAGCCGCCCcucUCCACc -3'
miRNA:   3'- ccAGACGuGG----UGUUGGUGGGu--GGGUG- -5'
3592 5' -56.7 NC_001650.1 + 180991 0.7 0.697109
Target:  5'- --cCUGC-CCACAuggACC-CCUGCCCACa -3'
miRNA:   3'- ccaGACGuGGUGU---UGGuGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 180959 0.7 0.697109
Target:  5'- --cCUGC-CCACAuggACC-CCUGCCCACa -3'
miRNA:   3'- ccaGACGuGGUGU---UGGuGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 180716 0.74 0.489214
Target:  5'- --cCUGC-CCGC--CCGCCCGCCCACc -3'
miRNA:   3'- ccaGACGuGGUGuuGGUGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 179992 0.66 0.918153
Target:  5'- aGGUg-GUggaGCCACAGagagaCACCCACCCu- -3'
miRNA:   3'- -CCAgaCG---UGGUGUUg----GUGGGUGGGug -5'
3592 5' -56.7 NC_001650.1 + 178501 0.67 0.873317
Target:  5'- ---gUGC-CCACAACCcCCCaugaucacagACCCACa -3'
miRNA:   3'- ccagACGuGGUGUUGGuGGG----------UGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 178460 0.66 0.912424
Target:  5'- --cCU-CACCGCGACCACCgGgaccCCCAUg -3'
miRNA:   3'- ccaGAcGUGGUGUUGGUGGgU----GGGUG- -5'
3592 5' -56.7 NC_001650.1 + 178130 0.73 0.537194
Target:  5'- -cUCU-CGCCGCGcGCCACCCAgCCCACc -3'
miRNA:   3'- ccAGAcGUGGUGU-UGGUGGGU-GGGUG- -5'
3592 5' -56.7 NC_001650.1 + 176994 0.66 0.906466
Target:  5'- --cCUGUACCACuuCUuCCaCACCUACg -3'
miRNA:   3'- ccaGACGUGGUGuuGGuGG-GUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 175170 0.67 0.866041
Target:  5'- ---aUGgACCACccacacuuauCCACCCACCCAUc -3'
miRNA:   3'- ccagACgUGGUGuu--------GGUGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 174714 0.66 0.905857
Target:  5'- uGGUCUGCcUgGCAACCAgagagacCCCACUgGg -3'
miRNA:   3'- -CCAGACGuGgUGUUGGU-------GGGUGGgUg -5'
3592 5' -56.7 NC_001650.1 + 174519 0.73 0.566757
Target:  5'- aGUCUGC-CCAgCAACCugUCACUCAUu -3'
miRNA:   3'- cCAGACGuGGU-GUUGGugGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 172729 0.66 0.906466
Target:  5'- gGGcCUGC-CCACu-CUACCCuaagGCCCAa -3'
miRNA:   3'- -CCaGACGuGGUGuuGGUGGG----UGGGUg -5'
3592 5' -56.7 NC_001650.1 + 172067 0.67 0.873317
Target:  5'- uGUCUGUGCCGCGgcgGCCAUCUugUCu- -3'
miRNA:   3'- cCAGACGUGGUGU---UGGUGGGugGGug -5'
3592 5' -56.7 NC_001650.1 + 171394 0.66 0.91759
Target:  5'- gGGUCUuaAagacccuCUAgGACCACCCugCCAg -3'
miRNA:   3'- -CCAGAcgU-------GGUgUUGGUGGGugGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.