Results 1 - 20 of 203 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 116252 | 0.66 | 0.90028 |
Target: 5'- uGGUCUugGCCuCGGaCACCCGCCCGu -3' miRNA: 3'- -CCAGAcgUGGuGUUgGUGGGUGGGUg -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 135608 | 0.66 | 0.90028 |
Target: 5'- cGG-CgcaCACCACAGCUAgCCuggcGCCCGCg -3' miRNA: 3'- -CCaGac-GUGGUGUUGGUgGG----UGGGUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 75966 | 0.66 | 0.912424 |
Target: 5'- --cCUG-ACCGCAgagaugACCACCuCACCUACc -3' miRNA: 3'- ccaGACgUGGUGU------UGGUGG-GUGGGUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 121275 | 0.66 | 0.906466 |
Target: 5'- cGGcCUGCuCCaACAagaGCCACCUgucCCCGCc -3' miRNA: 3'- -CCaGACGuGG-UGU---UGGUGGGu--GGGUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 33975 | 0.66 | 0.90028 |
Target: 5'- uGUCaGUACCcuCAACCugacugacauACCCACCCuACa -3' miRNA: 3'- cCAGaCGUGGu-GUUGG----------UGGGUGGG-UG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 100571 | 0.66 | 0.906466 |
Target: 5'- cGUC-GCACCcgcCGGCCGCgucccUCACCCGCc -3' miRNA: 3'- cCAGaCGUGGu--GUUGGUG-----GGUGGGUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 89116 | 0.66 | 0.906466 |
Target: 5'- cGGgggGCAUCcuGCuacACCACCCGCCCu- -3' miRNA: 3'- -CCagaCGUGG--UGu--UGGUGGGUGGGug -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 159842 | 0.66 | 0.90028 |
Target: 5'- gGGUCUGgGaCCACugAACCGCUUgaaGCCCGg -3' miRNA: 3'- -CCAGACgU-GGUG--UUGGUGGG---UGGGUg -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 178460 | 0.66 | 0.912424 |
Target: 5'- --cCU-CACCGCGACCACCgGgaccCCCAUg -3' miRNA: 3'- ccaGAcGUGGUGUUGGUGGgU----GGGUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 176994 | 0.66 | 0.906466 |
Target: 5'- --cCUGUACCACuuCUuCCaCACCUACg -3' miRNA: 3'- ccaGACGUGGUGuuGGuGG-GUGGGUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 8007 | 0.66 | 0.905857 |
Target: 5'- uGGUCUGCcUgGCAACCAgagagacCCCACUgGg -3' miRNA: 3'- -CCAGACGuGgUGUUGGU-------GGGUGGgUg -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 76427 | 0.66 | 0.90028 |
Target: 5'- ---gUGCGCCAUGACCACcgCCACCa-- -3' miRNA: 3'- ccagACGUGGUGUUGGUG--GGUGGgug -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 71335 | 0.66 | 0.90028 |
Target: 5'- --cCUGCGCCcuCAggucccucuGCCACCCAaaggUCCACa -3' miRNA: 3'- ccaGACGUGGu-GU---------UGGUGGGU----GGGUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 117018 | 0.66 | 0.914743 |
Target: 5'- uGGcUCUGguCCACAaacggggaccuggccGCCGCCCugCgGa -3' miRNA: 3'- -CC-AGACguGGUGU---------------UGGUGGGugGgUg -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 10287 | 0.66 | 0.906466 |
Target: 5'- --cCUGUACCACuuCUuCCaCACCUACg -3' miRNA: 3'- ccaGACGUGGUGuuGGuGG-GUGGGUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 11753 | 0.66 | 0.912424 |
Target: 5'- --cCU-CACCGCGACCACCgGgaccCCCAUg -3' miRNA: 3'- ccaGAcGUGGUGUUGGUGGgU----GGGUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 136150 | 0.66 | 0.893868 |
Target: 5'- uGGcCaUGCGCCugAAggCGCCC-CCCGCg -3' miRNA: 3'- -CCaG-ACGUGGugUUg-GUGGGuGGGUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 50490 | 0.66 | 0.918153 |
Target: 5'- cGUCUcCcCCGCcGCCGCCCGCUCcCg -3' miRNA: 3'- cCAGAcGuGGUGuUGGUGGGUGGGuG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 121492 | 0.66 | 0.899015 |
Target: 5'- --cCUGCGCCgcuGCAGCCccaccagcaucuCCCACCgGCu -3' miRNA: 3'- ccaGACGUGG---UGUUGGu-----------GGGUGGgUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 174714 | 0.66 | 0.905857 |
Target: 5'- uGGUCUGCcUgGCAACCAgagagacCCCACUgGg -3' miRNA: 3'- -CCAGACGuGgUGUUGGU-------GGGUGGgUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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