miRNA display CGI


Results 1 - 20 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3592 5' -56.7 NC_001650.1 + 7812 0.73 0.566757
Target:  5'- aGUCUGC-CCAgCAACCugUCACUCAUu -3'
miRNA:   3'- cCAGACGuGGU-GUUGGugGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 169277 0.73 0.527456
Target:  5'- -aUCUGCcCgGCAACCGCCUACCuCAUa -3'
miRNA:   3'- ccAGACGuGgUGUUGGUGGGUGG-GUG- -5'
3592 5' -56.7 NC_001650.1 + 15845 0.73 0.537194
Target:  5'- aGGUUgugGcCACC-CAcCCACCUACCCACc -3'
miRNA:   3'- -CCAGa--C-GUGGuGUuGGUGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 182552 0.73 0.537194
Target:  5'- aGGUUgugGcCACC-CAcCCACCUACCCACc -3'
miRNA:   3'- -CCAGa--C-GUGGuGUuGGUGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 11423 0.73 0.537194
Target:  5'- -cUCU-CGCCGCGcGCCACCCAgCCCACc -3'
miRNA:   3'- ccAGAcGUGGUGU-UGGUGGGU-GGGUG- -5'
3592 5' -56.7 NC_001650.1 + 178130 0.73 0.537194
Target:  5'- -cUCU-CGCCGCGcGCCACCCAgCCCACc -3'
miRNA:   3'- ccAGAcGUGGUGU-UGGUGGGU-GGGUG- -5'
3592 5' -56.7 NC_001650.1 + 60104 0.73 0.546994
Target:  5'- gGGUCUG-GCC-CGACC-CgCCGCCCGCg -3'
miRNA:   3'- -CCAGACgUGGuGUUGGuG-GGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 109669 0.73 0.55685
Target:  5'- uGGUCUGCcagACCcagcaGCAGCUGCCCAgguCCUACg -3'
miRNA:   3'- -CCAGACG---UGG-----UGUUGGUGGGU---GGGUG- -5'
3592 5' -56.7 NC_001650.1 + 38951 0.73 0.55685
Target:  5'- cGGUgUGCGagaUACcguUCGCCCACCCACg -3'
miRNA:   3'- -CCAgACGUg--GUGuu-GGUGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 2570 0.73 0.527456
Target:  5'- -aUCUGCcCgGCAACCGCCUACCuCAUa -3'
miRNA:   3'- ccAGACGuGgUGUUGGUGGGUGG-GUG- -5'
3592 5' -56.7 NC_001650.1 + 180716 0.74 0.489214
Target:  5'- --cCUGC-CCGC--CCGCCCGCCCACc -3'
miRNA:   3'- ccaGACGuGGUGuuGGUGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 14009 0.74 0.489214
Target:  5'- --cCUGC-CCGC--CCGCCCGCCCACc -3'
miRNA:   3'- ccaGACGuGGUGuuGGUGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 16156 0.77 0.3509
Target:  5'- aGGcCUGC-CCACuGACCucaugugGCCCACCCACu -3'
miRNA:   3'- -CCaGACGuGGUG-UUGG-------UGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 182863 0.77 0.3509
Target:  5'- aGGcCUGC-CCACuGACCucaugugGCCCACCCACu -3'
miRNA:   3'- -CCaGACGuGGUG-UUGG-------UGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 2426 0.77 0.367304
Target:  5'- -aUCUGCcCgGCAACCGCCUACCuCACa -3'
miRNA:   3'- ccAGACGuGgUGUUGGUGGGUGG-GUG- -5'
3592 5' -56.7 NC_001650.1 + 169133 0.77 0.367304
Target:  5'- -aUCUGCcCgGCAACCGCCUACCuCACa -3'
miRNA:   3'- ccAGACGuGgUGUUGGUGGGUGG-GUG- -5'
3592 5' -56.7 NC_001650.1 + 132212 0.76 0.408433
Target:  5'- gGGUgcCUGCugCGCGGCguCuCCGCCCACa -3'
miRNA:   3'- -CCA--GACGugGUGUUGguG-GGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 159204 0.75 0.461404
Target:  5'- cGUCUGUugcauCCACuuCCACuCCAUCCACa -3'
miRNA:   3'- cCAGACGu----GGUGuuGGUG-GGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 1227 0.74 0.479854
Target:  5'- -aUCUGCcUgGCAACCGCCUACCuCACa -3'
miRNA:   3'- ccAGACGuGgUGUUGGUGGGUGG-GUG- -5'
3592 5' -56.7 NC_001650.1 + 167934 0.74 0.479854
Target:  5'- -aUCUGCcUgGCAACCGCCUACCuCACa -3'
miRNA:   3'- ccAGACGuGgUGUUGGUGGGUGG-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.